Pseudomonas chlororaphis EA105, NZ35_RS16295

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain EA105 contig_15, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTCGGCCTGATGCAGCCCTGGCGCTTCATTCGCATCAGCGACCGTACCCTGCGCGGCGAGATCCAGAATCTCGTGGAAGAGGAACGCATCCGCACCGCAG AAGCCCTCGGCGAGCGCAGTGACGAGTTCATGAGGCTCAAGGTCGAAGGCATCCATGACTGCGCCGAGGTGCTGGTCGCCGCGTTAATGGACGATCGCGA AAAACACATCTTCGGTCGCCGCACGCTGCCGGAAATGGACATGGCCTCGTTGTCCTGCGCGATCCAGAACCTGTGGCTGGCCGCGCGCGCCGAAGGCCTG GGCATGGGCTGGGTTTCGCTGTTCGAGCCACAGGCACTGGCGGATTTGCTGAAATTGCCCGAAGGCGCCAAACCTCTGGCGGTTTTGTGTCTGGGCCCGG TCAAGGAATTCTATCCGGCGCCGATGCTGGTACTCGAAGGGTGGACGCAGGCGCGGCCGCTCAATGAGTTGCTGTATGAAAATTATTGGGGAGTGAGTCA
DNA Sequence for Gene
>NZ35_RS16295
ATGAGTGTGGCGTTGTTGAGTGTCGCCGCAGTGGCGCTGGATGCGCTGTTGGGTGAACCGAAACGCTGGCATCCGCTGGTGGCGTTCGGCAATTTCGCCG GGCGCATCGAGCAACGATTCAACGCCGGTGGTCGTGGCTGGCGCAGTCATGGCGTCACCGCGTGGGTAATTGCGGTGCTGCCGCTGACCTTGCTCGCCAC CGCGTTTTCCTGGGCGCCGTATGCAGGTTGGGTTGTCGAGATTCTCGCGTTGTATTGCGCCCTCGGCATGCGCAGCCTCGGTGAGCATGTAGCGCCCGTC GCTGCTGCCCTACGCGCGGATGATCTGGACGAGGCGCGCAAACGCGTGGGCTATCTGGTCAGTCGCCAGACCGATGAACTCGACAGCACTGCTGTCGCCC GTGCCGCCACCGAGTCAGTGCTGGAAAACGGCAGCGATGCGGTGTTCGCCGCGTTGTTCTGGTTTGTCGTCGCCGGTGCGCCGGGCGTGGTGCTTTATCG CTTGAGCAACACGCTCGATGCGATGTGGGGTTATCGCAACGAACGCTTTGAGCGTTTCGGTTGGGCGGCGGCGAAAATCGACGACGTGCTGAACTACATT CCTGCACGTCTGGTGGCGTTGACCTATGCGCTGCTGGGTAAAACCCGACTCGCGCTGAGGTGCTGGCGTACACAAGCGCCGAAGTGGGACAGCCCCAATG CCGGTCCGGTGATGGCGGCCGGCGCCGGTGCGCTGGGCGTGGAATTGGGTGGGCCGGCGATTTACCACGGTGAACTTCACGACCGTCCGCAACTCGGCGA AGGGCAACCGGCCGATGCCGATTCCATCGACCGTGGCTGGCAATTGGTCCAGCGCGGCGTATGGTTATGGCTGCTGATTCTCTGCGTGGGGGCTGAATTC TATGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACGGTGGCCGGCTGCGCAAGGCTGCACACGATTACGGCATCGCCGAAGCGGATTGGCTCGACCTGTCCAGCGGCCTCGCGCCATGGCCATTTCCGATT CCGGACATCCCGCTGCGCGCCTGGGCGCGTTTGCCGGAAACCGACGACGGTCTGGAACAAGCTGCGTGCGATTACTACGGTGCCGCGCAGGTGCTGCCAG TGGCTGGTTCGCAGATGGCTATCCAGTTGCTGCCGCGTTTGCGCCGCGCCGGCAAAGTCGGCGTGTTGTCACCGTGTTATGCCGAACATGCCGAAGCCTG GCGCCGCAGCGGTTACATCGTGCGCGAAGTGCTGGAGCAGGAAGTCGAATTCTTTCTCGACAGCCTCGACGTGCTGGTGGTGGTCAACCCGAACAATCCG ACTGGCCTGAGCCTGACCCCGGCACGATTGCTCGACTGGCACGCGCGGCTTGCCCGGCGTGGCGGCTGGCTGGTGGTCGATGAAGCTTTCATCGACAACA
Amino Acid Sequence
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGNFAGRIEQRFNAGGRGWRSHGVTAWVIAVLPLTLLATAFSWAPYAGWVVEILALYCALGMRSLGEHVAPV AAALRADDLDEARKRVGYLVSRQTDELDSTAVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDVLNYI PARLVALTYALLGKTRLALRCWRTQAPKWDSPNAGPVMAAGAGALGVELGGPAIYHGELHDRPQLGEGQPADADSIDRGWQLVQRGVWLWLLILCVGAEF YA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site