Pseudomonas chlororaphis EA105, NZ35_RS02190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTAGGAAAAGCGCGAAGTGCCGTCTGGCATCAGGCCTTTGCCCTGAGTCGCGCGAATCGCCTGACACAGGTTGGTCTTGCCCGACTTACAGAATTTGCAC TGGCCGCATTCCGGGGTGTACAGCGGAATAACGTGATCGCCAACGGCAACCGAGGTCACGCCTTCGCCGATCGCTTCAACGATGGCGCCACCTTCGTGGC CGAGGATCGACGGGAAGATGCCTTCCGGATCAGCACCGGACAGGGTGTAGGCGTCGGTGTGGCAAACCCCGGAAGCCACCACGCGCAGCAGGACTTCACC GGCCTTGGGCATGGCGACATCGACTTCTACGATTTCCAGCGGCTTCTTGGCCTCGAAGGCAACGGCGGCGCGCGACTTGATCATGCTGACTCTCCAGTGA ATCCAATGAGTAAAAAACCAGACAAGGAGTGTAATACACAGCTTTACGATGAATAATCAGGACAAAAGCAAAACATTATTGCCATACAGGGATAATCCTG
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| DNA Sequence for Gene |
>NZ35_RS02190
ATGTCCGAAAACCGCTGGGAAGGCATCGACGAGTTCGTCGCCGTTGCTGAGTGCAGCCAGTTCACTGCCGCTGCCGAACGTCTTGGGGTTTCGTCCTCGC ACATCAGTCGACAAATCGTACGCTTGGAAGAAAGACTTCAGACGCGCCTGCTCTATCGCAGCACCCGCCGGGTGACGCTGACCGAGGCTGGGCAGACCTT TCTGCAACATTGCCAACGCTTGCAGGACGGTCGCGAAGAAGCCTTGCGTGCAGTCGGCGATCTGACCAGCGAACCGAAAGGCATGCTGCGCATGACCTGC GCCGTAGCCTACGGTGAGCGTTTCATCGTGCCGCTGGTGACGCGGTTCATGGGCCTGTATCCGCAGTTGCGCATCGATATCGAACTGAGCAATCGCCAGC TCGATCTGGTGCATGAAGGTCTGGATCTGGCGATTCGCTTGGGCCGCCTGCAGGACTCGCGGTTGGTCGCGACACGTTTGGCGCCAAGGCGAATGTATCT CTGCGCGTCACCGTCATACGTTGAGCGGTACGGCCGCCCCCACAGCCTGTCGGAGTTGAGTCGACATAATTGCCTGATTGGCAGCTCGGACATCTGGCAG CTTGAGCAGAACGGGCGCGAGTTTTCCCAGCGCGTGCAGGGCAACTGGCGCTGCAACAGTGGGCAAGCTGTGCTGGATGCGGCGCTTCAGGGAGTGGGGT TGTGTCAGTTGCCGGATTATTACGTGCTGGAACATTTGCACAGTGGCGCGTTGATTTCGTTGCTGGAGGCGCATCAGCCGCCGAATACGGCGGTGTGGGC GTTGTATCCGCAGCAGCGGCATTTGTCGCCGAAGGTGCGCAAGTTGGTGGATTTTCTCAAGGAAGGGTTGGCTGAGCGGCCGGAATATCGAGGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAAGCAAAAGATCGCAGCCTTCGGCAGCTCCTACAAAGGCATGCGAACCCATGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATCTTTTAGCGGCGATTC GCCCAACGCTGGCGCAACCATTCAAGATCTTCAGGCCGGGTCACCTTAAGGTTATCCGCCCGCCCTTCAATCAGACGCGGCTTGAGACCGGCCCACTCCA TCGCCGAAGCTTCATCAGTAATCAGCGCATCAGCGACCAGACTGTCCGCCAACGCCCGATGCAACGCGCCGAGGCGAAACATCTGCGGCGTATACGCCTG CCAGATCACACTGCGATCGACGGTTTCCACCACCCGACCGTGCTTGTCGACGCGCTTCAACGTGTCGCGCGCAGGGACAGCGAGCAAACCGCCGACCGGA TCATCCGCCAGTTCATCGAGTAACTTGTCGAGATCTTCGCGACTCAGATTCGGTCGTGCCGCATCGTGCACCAGCACCCAATCTTCATCATCTGCACCCT
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MSENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQTFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTC AVAYGERFIVPLVTRFMGLYPQLRIDIELSNRQLDLVHEGLDLAIRLGRLQDSRLVATRLAPRRMYLCASPSYVERYGRPHSLSELSRHNCLIGSSDIWQ LEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDYYVLEHLHSGALISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDFLKEGLAERPEYRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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