Pseudomonas aeruginosa H1l, U864_RS0129510
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa H1l COntig26, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGCGCAGATCAAGCAACTTATCGAAGGGACGCGCCTGCCCAAGCTGGAAAGCGACGACTACTACAATTTCGTCGACGCCAAGAAGGTCAAGCGGATC GCGGTCAACGACCTGATCCGCGACAAGCTGAGCCGAGGCAGCCTGGCTATCGTCAGCTATGACGGACGCTACGAGATCGTGCCTCGGGATGCGGCGGTGA AGATCCAGGAGCGCGATCCGCGGCGGGTGGTGCTGCTCAACGTACAGAGCCAGGAGCCGGACGAAGACGATCCCTACAAGGACTATGTGGTGCCCGACGA TCTCATGTGGTGAGGCCCGCATCCGGAGTGTCGCTTGACCGGTACGGATGCCGGTCAACTACCAATTCTGGAATGCGAAGCAGTTCTAAAATAACTACCG ATGATTTCGTTTCGATAGCATAATGCCTTTCCTCAGAAATATCCTACGGTTGCCTTTGCGTGCATCTGTGGGCTAGCCGCCTATCGAAAAGGACGTTGGT
|
|
| DNA Sequence for Gene |
>U864_RS0129510
ATGCCTTCCTCACAGCTTCCGGGGGCTTCGCCCTCGGAGATCGATCTCGTTCAGCTGTTCCAGCAATTGTGGGCGTCGAAATGGCTGATAGCGCTGATCG CGGCCTTGGCGACCGCCGCTGCGCTCGCCTACGCGCTGTTGGCCGTTCCGACCTACCAGGTGGATGTCCTGTTGCGGCCGATCCAGACCAAGGCCCTGGA GGCTGTCAATGTCAACGGGCTGTATGCCCTGACTCCGCGGGAAGCGCTGGATCGCGTCGGCAACGAGCTGGCAGCCTACTCCGGCAGGCTGGAGTATTTC GAAGCCCATCCAGAGCTATTCCAGCAATTGAACGCCGAGGGCCTGTCCCCCGAGCAGGCTTTCTGGAAGTTCAACCAGGATGCCTTCAGCATGCAGCAGG CGGACTTGAAGAAGGACCCCCAGGCGGCGCCTTTCTTCCGCTTGTCCATGCAGTATCCCCAGGGCATGGATGGTGCCGCCATTCTCAACGGCATGCTCGC GTCGACCATCGAGAACGAGCGTCAGCGAATCCTGGACGACCTCCAGGCGCGTATCGACGGTCGCCTGCAATTCCTCGAGCAGGATATCGAAGGCAAGCGT GCCAGTTACCAGGCTACCAAGGAGGGCAAGATCGCCCGGTTGCTGGAAGCGGACAGCATCCGGCGGGCCGGCCTGGAGGATGAGCTCAAGGCGTTGCGCG GGCGGCTGAAGATGGTGCGCGATTCGCGTATCCAGCAGCTCAACGAGGCTATCCAGATCGCCACCCGGCTGGGGATCGTCAAGCCGACGACCCCGGGCGC ACTGGGAGAGGTCGGGCAGGATGGCTCGCGCAGCGTTTTCCGCACCGAGGTGAATAACCAGCAGATACCCCTGTATTTCATGGGTGTCGATGCCTTGACC GCCGAGCGCGATACCTTGCTCAAACGCAAGGGCGATGACTTCACCGAGCCCCGCGTGGCGAAGATCCAGCAGGAGCTGAAGCAGCTGGAGAACAACCGTG AAGTGCAATACCTGCAGGCTCGAAAGGGCGAGGAGCGTTTCTTCGAAAACATCGACAAGCTGCGTGGAGAGCAGGCGCGCCTCAAGACTCTGAAGGCGAG CGAGCTGAAGATCGAACTGGTGCGGATCGACCAGAAGGCTTCGACCCCTCTGAAACCGATCAAGCCGCGCAAGGCCTTGGTGGTGGCCTTGGGTCTCCTG GGTGGGTTGGTGTTCGGCGTGCTGGTGGCTCTGGTTCGGGCAATGTTGCGTGCCCCTCGGCAACGGGTACAGGAAGATAGCCTGCCGCCGGGAGTCGTCA GTCTCGACCGGAGCCTTTCCGGGACCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GATCAAAGGTGCGCCCCCGAAGTACGCGGGGGCGCATGGTTCAGGCCGATTTACCTATCTGCCGCAGTTCTTCTTCTTTCTCCAGCTTGATCCGATAGGC GTGGGCGTCATCCTCGTTATGGAAGACGCCAACCAGCAGTCCCTGCTGATGCACGTCCCAGCAGCGGCGGCCAAGCGCACGCAGCTCGCGGGATTTGTGG TCATCGTCACGCTCGGTCACTGTCACACTCATCTTTCTCTGCTCCAGGGTTGATCTGCATCAAGGCAAATCCAGCCTATTTCAATAGCAGGCTAATCAAA TAGCCCTGGAATTGAGAAAAGCCTTTTCAGTTTCCAAGGTGTGAAGGTGGCATGCCGGATGCTCTGGAACAGGCCTCTTCCCTCAGGCGTATGCGGCCGA ACAAGGCCGCTTCCGTGAGGGCGGTAATCGCCAACAGGCGATCCAGGCGCAGCAGCAGAGTCGCTCCTTCGACGGCCACCTCAAGGTATTCCTCCTTGCC
|
|
| Amino Acid Sequence |
>hypothetical protein
MPSSQLPGASPSEIDLVQLFQQLWASKWLIALIAALATAAALAYALLAVPTYQVDVLLRPIQTKALEAVNVNGLYALTPREALDRVGNELAAYSGRLEYF EAHPELFQQLNAEGLSPEQAFWKFNQDAFSMQQADLKKDPQAAPFFRLSMQYPQGMDGAAILNGMLASTIENERQRILDDLQARIDGRLQFLEQDIEGKR ASYQATKEGKIARLLEADSIRRAGLEDELKALRGRLKMVRDSRIQQLNEAIQIATRLGIVKPTTPGALGEVGQDGSRSVFRTEVNNQQIPLYFMGVDALT AERDTLLKRKGDDFTEPRVAKIQQELKQLENNREVQYLQARKGEERFFENIDKLRGEQARLKTLKASELKIELVRIDQKASTPLKPIKPRKALVVALGLL GGLVFGVLVALVRAMLRAPRQRVQEDSLPPGVVSLDRSLSGT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|