Pseudomonas aeruginosa H1l, U864_RS0118715

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa H1l COntig8, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGCGGCCGATATCCGCCTCGTTGCCGTAGATCTGCGCGGTATCGATGGCGCGATAGCCCAGTTCGAGGGCGCTGCGCACCGAGTCGACGACGACCTGGC CGGTAAGGCGGAAGGTGCCGAGACCGAAGGACGGGAGGGGGTGGATGGTGGACGACATGGCTGCGCTCCGTGGGCGGGATGGCTCGAATGAAGCGCAGTG TGGCGGCTTACATCTCTTCGATTAAGACCCGAATCGAGCAAATTCATTTGCGCTGGAGTCACGAATCCAGACGGCCTTCACGGGAGGTATCCAGCGGAAA TCCCCGTCAGCCGCTGGCAGGACGCAGTTCATCGGATTCCTGCGAATACTGCTGATAACGATAATCTCTATCATTTACTCCATTTTTACATTTACATACA CTTGCCCCGCCGCGAATTCCTACGCCGGTTTCCCACATAAACAAGAAACGCAGCCGGTCGCGCCAACGGCCTGCCTGCGCCGCCATCCAGGACACTGCAG
DNA Sequence for Gene
>U864_RS0118715
ATGAAACACGTCGTTTCCAGTGCGTTATTGCTCGGTCTCTCCTCGCTTTCCCTGGCCGCCCAGGCCGCTCCCATCGCCCTTGACCTTCCCGCCCAGCCCC TGGCCGCATCCCTCGAGCAATTGCAGGGCGCCAGCGGCCTGCGCATCCGTTTCGACCGCGCGGCCGTGGCCGACCGGCGCGCACCGGCCCTACGCGGCAC GCTGGAGCCAAGCGAGGCACTGCAGCGTCTGCTCGCAGGTTCCGGACTGAGCGGGGAGGTACGGGGCGGCGACGCCTGGGTCGAGGCCGCGGCGACAGGT GCCGGCATCGCCCCCGGCGACAGCGTCGACCTCGGCGCGCTCAGCGTGGTCGCCACCCAGGACCCGGCCACCGCCGCCATCACCGAAGACAGCGGCTCCT ACACCACGCGGGCGATGCGCACCTCGACCAAGCTGGCGATGTCGATCCGCGAGACCCCTCAGTCGGTCAGCGTGGTCACCCGCCAGCGCATGGACGACCA GGGCATGCGCGACCTCAACGACGCGGTGAAGGGCGTCACCGGCCTCACCGTGCAACAGTACGGGCCGGCCCGGGTGAAGTACGCGGCGCGCGGCTTCGAC GTCGACAACATCATGTACGACGGCCTGCCGACGAGCATTTCCACCTATACCCAGGACGTCATTTCCGCCGCCGACCTGGCCATGTTCGACCGCGTCGAAG TGGTGCGCGGCGCCACCGGACTGATGCAGGGCGCAGGCAACCCGGCGGCGGCGATCAACATGGTGCGCAAGCGTCCGACCCAGGACTTCCGCGCCTCCCT GCAAGGCAGCGTCGGCACCTGGGACCGCTATCGCAGCGAGGCCGACGTTTCCGGCCCGCTGAACAGCGAAGGAACCCTGCGCGGCCGCGCGGTGGTCGCC TACCAGAAAGGCAACAGCTTCCAGGACCACGTCAGCAGCGAACGCGGCGTGTTCTACGGGATCGCCGAAGCCGACCTGAGCCCGGACACCACCTTCGCCA TCGGCGCCTCGAACCAGAACGACAACCGCAACGACAACTGGGTAGGCCTGCCCAGCCCGCTGGGCGGCCGCCACCTGGACCTCAAGCGCTCGTCCTATTA CGGCGCCGACTGGTCCTACTGGGATACCGACACCACCCACCTGTTCAGCGACCTGACCCACCGCTTCGCCAACGGTTGGCAGATGAAGCTGGCCGCCGAC AAGCTGTGGGCGCGAATCAACATGCTCGGGCTGTACAACGACTGCTACTACTCGACCACCGGCTGCGCCAGCATGACCCAGAACCCCGGCGACTACAGCT ACACCGACGACCACGACAGCTATGACGCCTATGCTAACGGTCCCTTCCAGTTGCTCGGCCGCGAGCACGAGCTGGTGGTCGGCGCCAGCTATCGCCAGGA ACGCTTCGACGGCCACGGCGGCTGGGGCAGCCTGTTCAACAAGGACGGCACCCCCACCGGGCCGATGGACCCGACCCAGTGGGACCCGAGCTCGACTCTC AAGCCGAGGCTGAACACCAGCCTGTGGGGCATGAAGCTCGACCAGGAACAGAAAGGCGCCTACCTCACCACCCGGTTGAACCTCGCCGACCCGCTGAAAG TGATCCTCGGCGGGCGCCTGGACTGGTACAAGGCCGACGCCGATACCGACAGCTACAAGGTCACCCGCAACGTCACCCGCTATGCCGGGGTGATCTACGA CCTGAACCAGACCTACTCGGTCTACGCCAGCTATACCGACATCTTCAAGCCGCAGAGCAACTTCGACGCCGGCGGCGGCCTGCTCGACCCGATCACCGGC AAGAACTACGAGATCGGCCTGAAGGGCGAACACTTCGGCGGCGCGCTCAATTCGCAGATCGCGCTGTTCCAGATCGACCAGGAAAACCGCGCCACCGAGG ACGTCGGCGGCCCCTCGCCATGCCCCTTCAGCCCCACCTCGCGCTATTGCTCGCGCGCTTCGGGCAAGGTCCGCAGCCAGGGCGTCGACCTGGAGCTGAG CGGTGCGCTGAGCGACGACTGGCAGATGATGGCCGGCTATACCTACGTCGACGCCAAGTACAAGCACGACAGCAACAAGGCCAACGAGGGCAAGCCATTC GACGCGGCCAAGCCACGCCACCTGTTCAAGCTCGCCACCAGCTATACGCTACCCGGCGAACTGCACAAATGGCGCGTCGGCGGCGACCTGGCCACCCAGA GCAAGACCGAGGACAGCAGCACCGGTTTCCAGCAGGGCGGCTACACCGTGGTCAACGCCATGCTCGGCTACAAGGTCAACGAACGGATCGACACGCGGCT GAACTTCAACAACCTGTTCGACAAGTACTATTACAGCGGCATCGACTTCGGCAACCTCAACTACGGCGAGCCGCGCAACCTGATGTTCACGGTGAAGTAC TCGCTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCCCGGACCGCCGGCGTGCCTCCGCAGGCGCGGCGGCGGTGTCCGAACGGCCCTTCGAGGCGCCTCAGCAGGGCCGATAGCGGCGCTCGAACTCGCTCGC CAACTGCTCCAGCGTGACGCTCCCCAGGCGCTCCAGGAGCAACGCCTGCGCCGCCTCGAACGCCTCGCCGAGCGCTTCGTTGACCGCCTGCTCGACCAGG CATTCCGGATGATCGGTAGACAGGCCGATGGCGAAGATCGAGGACGCTCCCAGCGCCTGGTGGATATCCAGCAAGGTGATGTCCGCCAACGGCTTGGCCA GCCGCCAACCGCCGCGATGGCCCTTCTCCGAACTCACGTAGCCTTCGTTCTTCAGCAGCGCCATGGTCCGTCGCACCACCACCGGGTTGGTGCCGAGCAT CTGCCCGATGGCTTCGGACGTCGCCGGCCCTTCGTGGCGGGCCATATGGATCAGCACATGGAGCATGCGCGAGAGGCGGGTGTCGTTTCTCATGAACGGC
Amino Acid Sequence
>ligand-gated channel
MKHVVSSALLLGLSSLSLAAQAAPIALDLPAQPLAASLEQLQGASGLRIRFDRAAVADRRAPALRGTLEPSEALQRLLAGSGLSGEVRGGDAWVEAAATG AGIAPGDSVDLGALSVVATQDPATAAITEDSGSYTTRAMRTSTKLAMSIRETPQSVSVVTRQRMDDQGMRDLNDAVKGVTGLTVQQYGPARVKYAARGFD VDNIMYDGLPTSISTYTQDVISAADLAMFDRVEVVRGATGLMQGAGNPAAAINMVRKRPTQDFRASLQGSVGTWDRYRSEADVSGPLNSEGTLRGRAVVA YQKGNSFQDHVSSERGVFYGIAEADLSPDTTFAIGASNQNDNRNDNWVGLPSPLGGRHLDLKRSSYYGADWSYWDTDTTHLFSDLTHRFANGWQMKLAAD KLWARINMLGLYNDCYYSTTGCASMTQNPGDYSYTDDHDSYDAYANGPFQLLGREHELVVGASYRQERFDGHGGWGSLFNKDGTPTGPMDPTQWDPSSTL KPRLNTSLWGMKLDQEQKGAYLTTRLNLADPLKVILGGRLDWYKADADTDSYKVTRNVTRYAGVIYDLNQTYSVYASYTDIFKPQSNFDAGGGLLDPITG KNYEIGLKGEHFGGALNSQIALFQIDQENRATEDVGGPSPCPFSPTSRYCSRASGKVRSQGVDLELSGALSDDWQMMAGYTYVDAKYKHDSNKANEGKPF DAAKPRHLFKLATSYTLPGELHKWRVGGDLATQSKTEDSSTGFQQGGYTVVNAMLGYKVNERIDTRLNFNNLFDKYYYSGIDFGNLNYGEPRNLMFTVKY SL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site