Pseudomonas aeruginosa H1l, U864_RS0105600
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa H1l COntig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCACGTTGTCGGCGTCCAGCGCGCTGAGCAGCTCGATCTGTCGATCAATGTCCTGGTTGATATTGGCCAACTGGCCGATGAAGGCATTGGCCGCCTGGC GGGTGCCAGGGTCGGAGCTGCGCGACAGCTCGAAGCCGAGCTGGGTCAGGGCAGCGGCCAGGTGAGCGAGATTGCGCACACTCAACGAGTGCAACTGGCG GGAAACGGCCTGTTCATCCTGAACGGTGGGAGGGACATCCATGAGTCAGATCCTTCGACTGGCACAATGTGACATTCGTCACAGAGATTAACCGAAGCCC CGCAGAACATCCATGCCAGCTATTTCCCTTCGTCGGCTCTGGCCCGGCCCCTGCGTCGTCCTCAAGTTGTCAGATCCGCTGTCGATACTCTGCGTGCCGG AACACGCGCCATGCCCGCCTCGCCGGGCCACAGGGACGTCCTCGGCTGCCTCGTCGCAGCCTGCGTGCCGGTCCAACCTGGCAATCCATCGAGGCGTTCC
|
|
| DNA Sequence for Gene |
>U864_RS0105600
ATGCTGCAACAATCCCTACGTGCGCAAATCCTTGTCCTGCTCGGCGGCAGCCTGGCGGCGCTGCTACTCATAGCCCTGGTCTGCTTCGGCTCGCTGACCG GCAACGTACGCGCCTACCGCGAGTTGCTCGGCGGCCCCGTGCGGGCGGCGCAACTGATCGACGAGGCCAACCTGCAGTTCCGCGGCCAGGTCCAGGAATG GAAGAACGTCCTGCTGCGCGGACGCCAGGCAGAGGCCCAGACGAAATACTGGAGCCAGTTCGAAGCCCAGGAACGAGCGGTGCAGGACATCCTCGGCCGC CTGGGCAGCGTGGCCGAAGGCGAGTTGAAAGATCATGTCGAGCGCCTGCGCGAAGAGCACCGGCGGCTCGGTACGGCTTACCGACAAGGCAGGCAACGGT TCCTCGAGGCGGGCGCCGACCCCATCGCCGGCGACCAGGCGGTGACCGGCATCGACCGCGCCACCACCGCGCAGATGCAGGCCTTGCGCGGCGAACTGCA CCAGGCCAGTGATCTCCGTTCCGCCGCCATCAGCGCGGAGGCCCGGCGCACCATGCTGCTCGGCAGCCTGGTGTTGATCGGCGCCAGCCTGGCCGTCGCC CTGCTCAGCCTGTGGCTGGCCAATCGCAACCTGGTCCGTCCGGTGCAACGCCTGATCGAGCACATCGCCCAGCTCAGCCATGGCAACTTCGGCGAGCGCA TCGAGATCCGGCGCAAGGACGAACTCGGCAAGCTGGCCCTGGCCGCCAACACGCTGCGCGACTTCCTGGTGGACATCTTCGACCGGCTGCGGCGCAGTAC CCGCGACCTGGACAGCGCCAGCGGCTCGCTGAACGCGATCGCCAGCCTGATGGCGGCCGGTACCCGCGAGCAGTTCAGCCGCACCGACCAGGTCGCCACG GCGATGCAGGAAATGTCCGCCACCGCCCAGGAAGTGGCGCGCTACGCCGGCGACGCGGCCAAGGCCGCCGACGAGGCGGACGATTCCGCCCAGCGCGGCG AAGACGTGATGGAAGAAACGATTCGCAGCATCGGCGAGATGCGCAAGGAGATCGACCATACGGTGGAGGTCATCCGCCAGTTGGAAAGCGATAGCGGCAG GATCGGCAAGGTCCTCGACGTGATCCGCGGCATCGCCGAACAGACCAACCTGCTCGCCCTCAACGCGGCCATCGAAGCCGCCCGCGCCGGCGATGCCGGC CGTGGCTTCGCGGTGGTCGCCGACGAGGTCCGCACCCTGGCGCAGCGCACCGCCGAGTCCATCGCCGAGATCCACCAGATCATCGATACCGTGCAGAGCG GCGCGGTGAATGCCGCGCGCGCCATCGAAAGCGGGCAGTCGCGCAGCGAGGCCGGCGCCGAGCAGGTTGCCAACGCCGGCGCCATGCTGCGCCAGATCAC CGCCTCGGTGGAGGCGATCCGCGACATGAACCGCCAGATCGCTACCGCCGCCGAGGAGCAGACCGCCGTGGCCGAGGACATTTCCCGCAACCTCACGGAA ATCACCTCGATCGCCTCCAGCAACCAGGAACAGGTGGAGCAGACCGAAGCCGCCAGCCGTGATCTCCACAGCCTCTCCGCGCAACTGGGCGATGCCCTGC AACGTCTGCGGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCTGGGGTAAGGAAACGACTTCCATGAGGTAAGGCGGACAACCGCAGCGCGATTATCCGCCGCTCCAACGGGGGGTCATGGCGGATAGCGTTGTGGCGCT ATCCGCCATGCACAGCCAGGGTTCGATCAGTCGAGGACGTTGTCCAGCACCTCGTAGATCAGCCCGGTCGCCACCGCCACCAGCAGCAGGTCGGTGCCGG CCTGCATCCACTCGTAGCCGTCGTAGTGCGGCAGCCGGCCTAGCAGGCGGCCATCGAGTTTCTTGGCGATGCCGGGCGGCAGCGGCTTGCCGCGCGCCAG GTTCTTCTGGATGCCGGGCGGCAGGGCCGGCCCCGGGTTCCAGTAGCCGCGGTTGTCGCCGAGGATCACCCGTACCCCGCCGACGTCGATACGCGGTCCC GAGTCCCAGTTGCCGCCGCCGTTGCCCTTCTGGCCGGCGCCGCCGCCCTTGTTGCCGGGGCCGCCATGGTTGTCGTGGCCACCCTGGTTGCCTTTGTTGC
|
|
| Amino Acid Sequence |
>chemotaxis transducer
MLQQSLRAQILVLLGGSLAALLLIALVCFGSLTGNVRAYRELLGGPVRAAQLIDEANLQFRGQVQEWKNVLLRGRQAEAQTKYWSQFEAQERAVQDILGR LGSVAEGELKDHVERLREEHRRLGTAYRQGRQRFLEAGADPIAGDQAVTGIDRATTAQMQALRGELHQASDLRSAAISAEARRTMLLGSLVLIGASLAVA LLSLWLANRNLVRPVQRLIEHIAQLSHGNFGERIEIRRKDELGKLALAANTLRDFLVDIFDRLRRSTRDLDSASGSLNAIASLMAAGTREQFSRTDQVAT AMQEMSATAQEVARYAGDAAKAADEADDSAQRGEDVMEETIRSIGEMRKEIDHTVEVIRQLESDSGRIGKVLDVIRGIAEQTNLLALNAAIEAARAGDAG RGFAVVADEVRTLAQRTAESIAEIHQIIDTVQSGAVNAARAIESGQSRSEAGAEQVANAGAMLRQITASVEAIRDMNRQIATAAEEQTAVAEDISRNLTE ITSIASSNQEQVEQTEAASRDLHSLSAQLGDALQRLRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|