Pseudomonas sp. H1h, U862_RS0125300 (relA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig31, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGAAGTGGTGGCGGTGGAAGGCGTGCAGACCATGGTCGACCGCGCCGCCGCGAACGCCGCTAGCAACAATTTGCATAACACAAAGTTTTTTCAAGCCG ATTTATCCCAGCCTTTGACCGATGCCCAGTGGATCGGAAACGGCTTTTCTGCGGTACTCTTGGACCCACCGCGTGACGGTGCTTTCGAGGTGGTGCGCAA GCTCGCGACCCTGGGTGCCGAGCGGTTGGTGTATGTGTCGTGCAACCCTGCAACTCTGGCGCGCGATACGGTCGAATTGATCAAGCAGGGCTACCGGTTA AAACGTGCCGGGATTCTCGATATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTTGAAGCGAGCCAGGATGGCTCGTCTGAATCTGTCTGAT CTGTCCGCGCAGCGCTCGCTTTGGCCCCGCGAGCGCAAACGGACAATGAGGATCAGCGATTTGACGCATTGAATCTGCGTCGTAGGGAAGGTAAAGCAAG
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| DNA Sequence for Gene |
>U862_RS0125300
|relA
ATGGTACAGGTGAGAGCACACCAGCCGATCAACACCGACGGCAGTATCAATCTCGAGGCTTGGCTCGATCACGCGGTCAGTGTCGACATGGCACTGGATC GCGAAGCCTTGAAAGAGGCCTGCGAGTTCGCTCGCGAGGCCGAGCAGCAGTCCAACGCCGCAAAGAATCTGTGGGCCGAGGGCAGCGGCAGTTTCAGCAC CGGTCTTGAGATCGCCGAGATTCTCGCCGACCTCAAGCTCGATCAGGACTCGCTGGTTGCGGCGGTGCTGTACCGTGGCGTCCGTGAAGGCCAGATCGAA CTTGCGGCGGTCAGCCAGCGCTTCGGCCCGGTGGTGGCCAAGCTGATCGACGGCGTGCAGCGCATGGCAGCGATCAGTGCCAGCCTCAGCCCGCGCCAGT CGATGGTGATGGGTACCCAGGGCCAGGTGGAAAACCTGCGCAAGATGCTGGTGGCAATGGTCGACGACGTGCGCGTCGCACTGATCAAGCTCGCCGAGCG CACTTGTGCGATCCGCGCGGTGAAAACCGCCGACGACGAAAAACGCAACCGGGTCGCTCGGGAAGTCTTCGACATCTATGCGCCGCTCGCGCACCGCCTC GGCATCGGTCATATCAAATGGGAATTGGAGGACTTGTCCTTCCGCTACCTGGAACCGGATCAATACAAACAGATCGCCAAGTTGCTCCACGAGCGGCGGC TGGATCGTGAGCGTTTCATCGCCGACGTGATGACCCAGCTCAAGGACGAATTGCAGGCCACCGGCGTCGACGCCGACATCAGCGGCCGGGCCAAACACAT CTATTCGATCTGGCGCAAAATGCAGCGCAAGGGTCTGGAGTTCAGCCAGATCTACGACGTGCGTGCAGTGCGCGTGCTGGTGCCGGAAATGCGTGACTGC TACACCGCGCTCGGTATCGTCCACACCCTGTGGCGGCACATCCCGAAAGAGTTCGACGACTACATCGCCAACCCGAAAGAGAACGGCTACCGCTCGCTGC ACACCGCAGTGATCGGCCCTGAGGGTAAAGTGCTTGAAGTGCAGATCCGTACGCACTCGATGCACGAAGAGGCCGAACTTGGTGTGTGCGCGCACTGGCG CTACAAGGGCACCGACGTCAAATCCGGCTCCAACCACTACGAAGAGAAAATCTCCTGGCTGCGTCAGGTCCTCGAGTGGCACGAAGAACTGGGCGACATC GGTGGTCTGGCCGAACAGCTGCGGGTCGACATCGAACCGGATCGGGTCTACATCTTCACCCCCGACGGTCACGCCATCGATTTGCCGAAGGGCGCGACGC CGCTGGACTTCGCCTACCGTGTGCACACCGAAATCGGCCACAACTGCCGTGGTGCGAAGATCAACGGGCGCATCGTGCCGCTCAACTACAGCCTGCAGAC CGGTGAGCAGGTCGAGATCATCACCAGCAAGCACGGTACGCCGAGCCGCGACTGGCTGAACTCCAACCTCGGGTACGTCACCACCTCGCGGGCGCGGGCG AAGATCGTTCACTGGTTCAAGTTGCAGGCTCGCGATCAGAACGTTGCGGCCGGTAAAACCCTGATCGAACGCGAACTGACGCGTCTCGGCCTGCCGGCGG TGGATTTCGACAAGCTGGCCGACAAGGCCAACATGAAAACCGCCGAAGACATGTTCGCCGCCCTCGGCGCTGGCGACTTGCGCCTGGCGCAACTGGTCAA TCTGGCGCAGCAACTGGTCGAGCCGGAGCGCGGCAACGAACAGCTGGAGCTGATTCCGCGCAAAGCCACCGGCTACAAACCGGGCAAGCGCGGCGACATT CAGATCCAGGGCGTCGGCAACCTGATGACGCAGATGGCCGGCTGCTGCCAGCCGCTACCGGGCGACGCGATCGTCGGCTACATCACCCAGGGCCGTGGTG TGAGCATTCACCGTCAGGACTGCGCCTCGGTGCTGCAACTGGCCGGGCGTGAGCCGGAGCGGATCATTCAGGTCAGTTGGGGCCCGGTGCCGGTGCTCAC CTATCCGGTGGACATCGTCATCCGTGCTTACGATCGTTCCGGTCTGCTGCGTGACGTCTCGCAGGTGCTGCTCAACGAGCGCATCAACGTGCTGGCGGTC AACACCCGCTCGAACAAGGAAGACAACACGGCGCTGATGTCCCTGACCATCGAGATTCCCGGACTGGATGCGCTGGGACGCTTGCTGGGGCGGATTTCGC AGTTGCCGAACATCATCGAGACACGGCGTAACCGTACCCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGACCGGCGCCGTTCAACTGTGGGAGCGGGCTTGCTCGCGAAGAGGGTGTGTCAGTCGACATCATTGTTGCAGGCACAGCGCTTTCGCGAGCAGGTTCGC TCCCACAATGGTTTTGTGGTGAGACAGAAAAATGATCTACAGCCTTGAAGACCTGCTCCACCTGATGAACCGTCTGCGCGACCCGCAGTTCGGTTGCCCG TGGGACATCAAGCAGACCTACGCGACCATCGTCCCGCACACCCTTGAAGAAGCCTACGAAGTGGCCGATGCCATCGAGCGTGGCGACTTCGATCACTTGC AGGGCGAGTTGGGCGATCTGCTGTTTCAGGTCGTCTATTACAGTCAGTTGGCCCGGGAAGAAGGGCGCTTCGAATTTGCCGGGGTGGTCGACAGCATCAC CCGCAAGCTGATCCGTCGTCATCCGCATGTATTCCCGACCGGCGATCTGTATGCGCCGCTGGACGTGCCGCGTCTGAGCGAGGAGCAGGTCAAGCAGCGT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MVQVRAHQPINTDGSINLEAWLDHAVSVDMALDREALKEACEFAREAEQQSNAAKNLWAEGSGSFSTGLEIAEILADLKLDQDSLVAAVLYRGVREGQIE LAAVSQRFGPVVAKLIDGVQRMAAISASLSPRQSMVMGTQGQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL GIGHIKWELEDLSFRYLEPDQYKQIAKLLHERRLDRERFIADVMTQLKDELQATGVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLVPEMRDC YTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAHWRYKGTDVKSGSNHYEEKISWLRQVLEWHEELGDI GGLAEQLRVDIEPDRVYIFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYSLQTGEQVEIITSKHGTPSRDWLNSNLGYVTTSRARA KIVHWFKLQARDQNVAAGKTLIERELTRLGLPAVDFDKLADKANMKTAEDMFAALGAGDLRLAQLVNLAQQLVEPERGNEQLELIPRKATGYKPGKRGDI QIQGVGNLMTQMAGCCQPLPGDAIVGYITQGRGVSIHRQDCASVLQLAGREPERIIQVSWGPVPVLTYPVDIVIRAYDRSGLLRDVSQVLLNERINVLAV NTRSNKEDNTALMSLTIEIPGLDALGRLLGRISQLPNIIETRRNRTP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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