Pseudomonas sp. H1h, U862_RS0125135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig31, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAGCCCCGGTTTATGGGGGTTTTTCTGTTTGGCACGGCGCTTGCTAAAGCTCAGATACGAAAAACCGGTCACCCGAAGGTTCCCGACATGAGCATCAG CTTCGATAAAGCGCTCGGCATTCACGAAAAAGCACTGGGCTTCCGCGCCCAGCGTGCTGAAGTCCTGGCCAACAACATCGCCAACGCCGATACCCCGAAC TACAAGGCTCGGGATCTGGACTTCTCCAAAGTGCTCGAAGCACAGAGCCAGAAGAACGCCAACGGCACCATCGCCCTGAACATGACCAACAGCCGTCACA TCGAAGCTGAAGGCCTGGGCAATGGCGACGAGTCGCTGATGTATCGCACGCCGATGCAGCCTTCGATCGACCAGAACACCGTGGACGCTCAGCTGGAACA GTCCAACTACGCGGAAAACGCCGTCGGCTTCCAGGCCAGCTTCACCCTGCTCAACAGCAAATTCAAAGGGCTGGTGTCAGCCCTGCGCGGAGAGTAATCC
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| DNA Sequence for Gene |
>U862_RS0125135
ATGTCCCTGTCCAGCGTTTTCAACATTGCCGGCAGCGGCATGAGCGCACAAACCACGCGTCTGAACACCGTGGCTTCGAACATCGCCAACGCCGAAACCG TCTCCTCGAGCATCGACCAGACCTATCGCGCCCGTCACCCGGTGTTCGCCACCATGTTCCAGGGCGGTCAGAACAGCGGCAGCAACTCGCTGTTCCAGAG CCAGGACGCCGCGGGCCAGGGCGTACAGGTGCTCGGCGTGGTCGAAGACCAGAGCAACCTTGAAGCGCGCTACGAGCCGAACCATCCGGCCGCTGACGCC AAAGGCTACGTCTACTACCCGAACGTCAACGTGGTGGAAGAAATGGCTGACATGATTTCCGCGAGCCGGTCGTTCCAGACCAACGCCGAAATGATGAACA CCGCCAAGACCATGATGCAGAAGGTACTGACCCTCGGTCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAAGGGACGACTGCGATGAGTGTTTCCGATACCAGCAACACCATAAGCATGAAGGATCTGCTGTCCAACTCGTCGAAAAAGACCAGTGGATCAACAGTGG ATGGCATTGCTTCAGCGACTAACAGTTCCACCGGCGGCCAGGCTCTGGGCAAGGATGCGTTCTTGCAATTGCTGGTGACCCAGCTGAAAAACCAGAACCC GCTCGATCCGCAGGACAACAGCGCATTCGTTGCGCAGTTGGCGCAGTTCAGCAGCCTTGAGGGCATCACCACCCTCAACAGCACGGTCAGCTCGCTGGCC GGCAACTACAACTCGTCGCAGGCGTTGCAGGCGTCGTCGCTGGTGGGTCGCAACGTGATCGTGCAGACCAATACCGCGCAGCTCGACGACCCGAGCAAAG GCCTGACCGGTTCGGCGACCGTGCCTTCGTCGATTGCCGGCGGCACCGTGACGATCACCGACAGCACCGGCGCAACTGTGCGCACCATTGATCTGGGCAG
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| Amino Acid Sequence |
>flagellar basal body rod protein FlgC
MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQNSGSNSLFQSQDAAGQGVQVLGVVEDQSNLEARYEPNHPAADA KGYVYYPNVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVLTLGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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