Pseudomonas sp. H1h, U862_RS0123625

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. H1h Contig30, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGAAGTGCAGTTTCTTTCGAAGCGGTAAAAGTTTCAAAAAAATGAAATGACATCAAATTGATGGCACTTTTATTGTGGGTCGCTGTCTCCGGTAGATTTT TATAAAATCCAGCGAATTTTCGGAAGTGTCCTACTTCTATTTTTTTCGAGAGTTGTCATGCTTGCCGCCGTGTAATGGGACGGACGTTCGGGTCGATACG CTCAATCGGAATCGGGCCGCTCTGGATCAGGGCTTCTGAGGGGGCAGGGCAAATGCATGCAATATAAATCGCTATCAGGGATTCCCCTGCCACATATAGG GCGATCTCCTACACGGCTCAATGAACACTTCGTCTTGTTGTTTAACCAGATGCTTGCTAGTGGCCATCATAGTGATTACGATGCGCCCACTTGAAAGAGC ACATCTCAATTGGATGAGTCGCTTTACTGCTCTTCGATACTGTCCAGCGCCGTGGCAATTCCAATAGGCGCATGACTGTAATCCTAAATAAAGGCCATGG
DNA Sequence for Gene
>U862_RS0123625
ATGTCCTACTCAAGCAAACTTTCCGCCCATTACCTCGAACTCGCAAAAGTCTCTGTTTCCAAAGAGAATTTCGCGGGCGAAGACGTTCGTTTCTCGAGCG AATTCGAGGCGCTGGAAAGCGAGCTGGCCAAAGCCTCGTCGATGCACGAAAGCGGGCAGATCGACTGGCTGAAAATCCGTGAAAACAGCGAAAATCTGCT GCGTACCCAATCCAAGGATTTGCGCGTTGGCGCCTGGCTGACCTGGTCGCTGTACCAGCGCGAATCCTTCCCCGGGCTGCTGGCCGGCCTCGGCTTGCTG CACCATCTGTCGGAAAACAACTGGGCCGACGTTCACCCGCTCAAACCCCGCACCCGTGCTGCTGCCATCGGCTGGCTGGTGCCGCGTCTGGAGCAGGTGC TCACCGAAAATATCGCGATCAAGGAACAGCTGCCGATGTTCCGGCAGTTGTCCGAGCATCTGGCCGGCCTCGATGCTGCGTGCACCGAGCACCTGGGCGA CGACGCGCCGCTGCTGTTGCCGCTGTCACGTCGCCTGAAAACCATGATCCAGCGTGCGGCCGACAATCAGCCGGCCCCCGGTGTTGTGGGCGCAGCGGTG GCGCAGGTCAAGCAGGCCGCGAGCCAGTTGCTCACCCCCGGCGCACCGATCGACAACGAGAAAGACGCCTACAAGGCCTTGCGCGCCCAGCAGGAAAGCG CGCGCCCATTGTGCGCCTGGTGGCTCAAGCAGAAGGCCACGGACCTGCGCGCCCTGCGCCTGAACCGCACTTTGCTCTGGCTGCCGATCGACGCGGTGCC TGAGCGCAACGCCGAGCAGATCACCGTGCTGCGCGGCCTGCCGGTCGACAAGCTCAAGCAGTATCAGGATCGCTTCGATCAGGGCAAATATGCCGACCTG CTGGTGGAACTGGAGGCGAGCCTGGCGAAGGCGCCGTTCTGGTTCGATGGCCAGAGGATGGTCTGGGAATGTCTCCAGAACCTCAACGCCGAGATGGCAA TGCGCGAAGTGGAAATCCACTTCGCGCTTTTGGTTCAGCGCCTGCCCGGCATCATCGAGTGCCGTTTCCATGACGGCGCGCCGTTTGCCGATCCGTCCAC TCGGGCGTGGATCGCCGGCAATGTCATGCCGCACCTGCAAAGCGCCAGCGCGCCACGCAAGGTCGAAACCGACGACGTCGAAACCCAGCCTGCCTGGGAA AAAGCCCTGCAGGAAGTGCTGCCGCTACTGCGCAAGGAAGGCCTCAAGCCTGCCGTGCAGACGCTCAAGCAGGGGCTGCAATCGGCCCACGGCGGACGCG AGCGGTTCTTCTGGCAGTTCGCCCTCGCGCGGCTGTGCTTCATGGCCAAGAAGTACGAACTGGCCAAGAACCAGCTCGAAACCCTCGATCAGACATTACA GGACTCAGGCCTGCACGCCTGGGAGCCCGATCTTGCATTGGAAGTGCTGCACCTGCTGCACAGTTGCTGCGAGTTGTTGCCGCAGAACCATGCAGTGCGT GAACGCAAGGAAGAGATTTATCGCAGGCTGTGCCACCTCGATCTCGAAGTGGTACTCGAATAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCCAGGGCCACAACCGCAAGGAGAAAAGCCATGGCCAAAGAAGGCTCGGTAGCCCCCAAGGAACGCATCAACGTCACCTTCAAACCCGCCACCGGCGG TGCTCAGGAAGAGATTGAACTGCCGCTGAAGCTGCTGGCAATCGGTGACTACACCCACCGCAAGGACGATCGCAAAATCGAAGATCGCAAGCCGATCAGC ATCGACAAGATGACCTTCGACGAAGTGTTGGCCAAGCAAGAGCTGGGTCTGACGCTGAGCGTGCCGAACCGTCTGCAGGAAGATGGCGAGGCCGACGAGC TGGCTGTGCAACTGCGCGTCAATTCGATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGTGCCTGAGCTGAAAAAACTGATGGAACTGCGCGATGC GCTGGTGGCCCTCAAAGGCCCTCTGGGTAACGCACCTGCGTTCCGTAAAGCGATCGAAGGCGTGCTCGCCGACGACGAATCCCGCGGTCGCGTACTCGGT
Amino Acid Sequence
>type VI secretion protein ImpA
MSYSSKLSAHYLELAKVSVSKENFAGEDVRFSSEFEALESELAKASSMHESGQIDWLKIRENSENLLRTQSKDLRVGAWLTWSLYQRESFPGLLAGLGLL HHLSENNWADVHPLKPRTRAAAIGWLVPRLEQVLTENIAIKEQLPMFRQLSEHLAGLDAACTEHLGDDAPLLLPLSRRLKTMIQRAADNQPAPGVVGAAV AQVKQAASQLLTPGAPIDNEKDAYKALRAQQESARPLCAWWLKQKATDLRALRLNRTLLWLPIDAVPERNAEQITVLRGLPVDKLKQYQDRFDQGKYADL LVELEASLAKAPFWFDGQRMVWECLQNLNAEMAMREVEIHFALLVQRLPGIIECRFHDGAPFADPSTRAWIAGNVMPHLQSASAPRKVETDDVETQPAWE KALQEVLPLLRKEGLKPAVQTLKQGLQSAHGGRERFFWQFALARLCFMAKKYELAKNQLETLDQTLQDSGLHAWEPDLALEVLHLLHSCCELLPQNHAVR ERKEEIYRRLCHLDLEVVLE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site