Pseudomonas sp. H1h, U862_RS0121240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig26, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGAAAGCAAGCCTTCAGGTCAATTTCCAACCAGCGTTTCCTTATAAATAGATCTCTGGAGCTTCCAGAACCGAAATCCTGTTTGCCAGATATAAAAATA AAGAAGGGAATTATTTAAAGCTTTTCTGTAAAGCTTGTAAAAGCTAGGGCGGCCATCTTCTGTGGATAACTGGTTTGAGCCCTTATTCCGCTTGATGTAC AGAGAATGACAACTACAGTGGAAAACCGTGTCCAGCCTGTGCTGCACTGTCGGATAACCTGTGTGTGGAAACGGTAGTTATCCACAAGCTGGTTATCCAC CGAGTTCTACCCCCAGTTGTCCAGTGCCCTCAGAGGCGGTTATCCACAGAGCTTATTCACACACCGTTGGTCGCCTTTTTACCGGTTAACGCATTGATTA ATCATGACCACCACACAACCTGCATGTGGATAAGTGGGCCGCTCGCCGCTACAATGGCCGCTTGTTTTTGCCTCACCGGCTTTCAACTTAGGGGATATCC
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| DNA Sequence for Gene |
>U862_RS0121240
GTGTCAGTGGAACTTTGGCAGCAGTGCGTGGAGCTTTTGCGCGAGGAGCTGCCTGCCCAACAATTCAACACCTGGATCCGTCCACTACAGGTCGAAGCCG AAGGCGACGAGTTGCGCGTCTACGCACCGAACCGTTTTGTGCTGGACTGGGTCAACGAAAAGTACCTGGGTCGCGTCCTTGAACTGCTGGATGAGCACGG CAACGGCATGGCGCCTGCGCTTTCCTTATTAATAGGCAGCAAACGCAGTTCGGCACCGCGTGCCGCGCCGAATGCACCGTTGGCTGCTGCGCAAGCGTCT CAGGCTCAAACCAATGCCGCGCCAGCCAGTGCTCCGGCACCAGCCCCGACGGCTGCCCCCAGCAAGCGCTCGACGCACAAAGCCGAGGAAGTCAGTGAAG AGCCGTCCCGCGACAGCTTTGATCCGATGGCCGGTGCGGCCTCGCAACAGGCCCCGGTTCGCGCCGAACAGCGCACTGTTCAGGTTGAAGGCGCGCTCAA GCACACCAGTTACCTGAACCGCACCTTCACCTTCGAAAACTTCGTTGAAGGCAAGTCCAACCAGCTCGCCCGTGCGGCGGCCTGGCAGGTGGCGGATAAT CCCAAGCACGGTTACAACCCGCTGTTCCTTTATGGTGGCGTCGGCCTGGGTAAAACCCACTTGATGCATGCTGTGGGTAACCACCTGTTAAAGAAGAACC CGAATGCCAAGGTCGTCTACCTGCATTCCGAGCGCTTCGTGGCTGACATGGTCAAGGCGCTGCAACTGAATGCGATCAACGAGTTCAAACGCTTCTACCG TTCGGTGGATGCTTTGCTGATCGACGATATCCAGTTCTTCGCCCGCAAGGAGCGCTCGCAGGAAGAATTTTTCCACACCTTCAACGCCCTGCTTGAAGGT GGCCAGCAGGTCATTCTCACCAGTGACCGCTACCCGAAAGAAATCGAAGGCCTTGAAGAGCGCCTCAAATCCCGCTTCGGCTGGGGCCTGACCGTAGCCG TCGAGCCTCCGGAACTGGAAACCCGCGTGGCGATCTTGATGAAGAAGGCCGACCAGGCCAAAGTCGAGTTGCCACACGATGCGGCGTTCTTCATTGCCCA GCGAATTCGCTCCAACGTCCGTGAGCTGGAAGGCGCGCTGAAACGCGTGATCGCCCACTCGCACTTCATGGGCCGCGACATCACCATCGAGCTGATTCGC GAATCCCTGAAAGACTTGTTGGCGTTGCAAGACAAACTGGTCTCTGTGGATAACATTCAGCGCACAGTCGCCGAGTACTACAAGATCAAGATCTCCGACC TGCTGTCCAAGCGCCGTTCGCGCTCGGTGGCTCGTCCCCGTCAGGTGGCCATGGCCTTGTCCAAAGAGCTGACCAACCACAGCCTGCCGGAAATCGGCGA TGTGTTTGGCGGGCGCGATCACACGACGGTGTTGCACGCCTGCCGCAAGATCAACGAACTTAAGGAATCCGACGCGGACATCCGCGAGGACTACAAGAAC CTGCTGCGTACACTGACCACTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAACACCAGCGCAGCTTATTAAGGCAAGGGACTAGACCATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAACTGGTCGCAGGCGTCG TCGAGCGCCGACAGACCTTGCCGGTACTCTCCAACGTGCTGTTGGTCGTCGATGGCCAGCAACTGTCGCTGACCGGTACCGACCTGGAAGTCGAGCTGGT GGGTCGCGTGCAACTTGAAGAGCCGGCCGAAACAGGTTCCATCACCGTGCCCGCGCGCAAGCTGATGGACATCTGCAAGAGCCTGCCCAACGACGCGCTG ATCGACATCAAGGTCGACGAGCAGAAGCTGGTGGTGAAGGCCGGGCGTAGCCGCTTCACCCTGTCGACCCTGCCAGCCAATGATTTCCCGACGGTGGAAG AAGGCCCGGGTTCGCTGACCTGCAGCCTGGAGCAGAGCAAACTGCGTCGCCTGATCGAACGCACCAGCTTCGCCATGGCCCAGCAGGACGTGCGTTATTA
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| Amino Acid Sequence |
>chromosomal replication initiator protein DnaA
MSVELWQQCVELLREELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRVLELLDEHGNGMAPALSLLIGSKRSSAPRAAPNAPLAAAQAS QAQTNAAPASAPAPAPTAAPSKRSTHKAEEVSEEPSRDSFDPMAGAASQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADN PKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEG GQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIR ESLKDLLALQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRKINELKESDADIREDYKN LLRTLTT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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