Pseudomonas sp. H1h, U862_RS0120600
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGAGTCCTCCGAGCGCATCGTCAAACTGATCGATGTGCAGCGCGCTGCCGGAATAGACGCTTCGCGAATTTTCCTCGCCGGGTTTTCCCAGGGTGGCGC CGTCGTCCTGCACACCGCCTATCTGAAGTGGCAAGGTCCGTTGGGTGGCGTACTTGCCCTGTCCACCTATGCCCCGACCTTTACCGACGAAATGGAGCTT TGCGCCAGTCAGCAGCGCATTCCGGCGTTATGCCTGCACGGCCAGTTCGATGGCGTGGTGCAAAACTCCATGGGCCGCAGTGCCTACGAGCATTTAAAGC AGCATGGTGTCACCGTGACATGGCAGGAATACCCAATGGAGCACGAAGTGTTACCCGAAGAAATTCGCGACATCGGCGTCTGGCTGACCGAGCGTCTACG CTGATTCGGCCGCAGAGCGGACCCCTTTGATCATCCCACTACGCCGAGCCCGCTTCTTGCATTACACTGGCCGGCGTACATTCCTTAACCAATTGATGAG
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| DNA Sequence for Gene |
>U862_RS0120600
ATGACCGTGCTCAAAGCACTCAAGAAAATGTTCGGTAAAAGCGAGGCTGAGCAGCTCGCGCCAGTTCCCAGTGCGCCGTCGCACGCCCCCGGCCCTCGCA GCGAGGCTCCCAAGGCTGAACATCCGGCTCCGCTAGCGACACCCAAGCCTGAGCCGCAACCCGCTACCGCCGCCGAACCTGTCCGCGCCGAAGCGCCGAA ACCGGCCCGCCCGCGTCGCGAACCCAAGCCCAAGGCACCGGTCATTCCCTGGAAACTCGAAGATTTCGTCGTCGAACCCCAGGAAGGCAAAACCCGCTTC CACGATTTCAAACTCGCTCCGGAACTGATGCACGCCATCCAGGACCTGGGCTTTCCGTACTGCACGCCGATCCAGGCGCAGGTGCTGGGTTTCACCCTCG CCGGCAAAGACGCCATCGGCCGCGCGCAGACCGGTACCGGCAAGACGGCCGCGTTCCTGATCTCGATCATCACTCAGCTGTTGCAGACCCCACCGCCAAA AGAGCGCTACATGGGCGAACCCCGTGCGCTGATCATCGCGCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCCGCTGACCTGACCAAGTACACC GGCCTGAACGTCATGACGTTCGTCGGCGGCATGGACTTCGACAAGCAGCTCAAGCACCTCGAAGCCCGCCATTGCGACATTCTTGTCGCTACCCCGGGCC GTCTGCTCGACTTCAACCAGCGTGGCGACGTGCACCTGGACATGGTCGAAGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGTTTCATCCC GCAAGTACGCCAGATCATTCGCCAAACCCCGCCGAAGTCCGAGCGCCAGACCCTGCTGTTCTCCGCGACCTTCACCGAAGACGTGATGAACCTGGCCAAG CAATGGACCACCGACCCTGCGATCGTAGAAATCGAAGTCACCAACGTGGCCAACGAAAACGTCGAGCAGCACATCTACGCCGTGGCCGCTGCCGACAAGT ACAAACTGCTGTTCAACCTGGTCAACGACAACGGTTGGGAGCGGGTGATCGTGTTTGCCAACCGCAAGGACGAAGTACGGCGCATCGAAGAACGCCTGGT GCGTGACGGCATCAACGCCGCGCAACTGTCGGGCGACGTGCCGCAACACAAGCGCATCAAGACCCTCGAAGGCTTCCGCGAAGGCAAGATCCGCGTATTG GTCGCGACCGACGTGGCCGGGCGCGGCATTCACATCGACGGCATCAGTCACGTGATCAACTTCACCCTGCCAGAAGTACCGGACGACTACGTGCACCGCA TCGGTCGTACCGGTCGTGCAGGCGCCGACGGCGTATCGATCAGCTTCGCCGGTGAGGACGACTCCTACCAGTTGCCGTCCATCGAAGAGAAGCTCGGTCG CAAGATCAGCTGCGAAACGCCGCCGACGCATCTGTTGCGTGCAGTTGAGCGCAAGCGTCCGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGACGTTTGAAAGAAAGCGCAGCCGACAACGACTGCGCTTTTTTTTCGCCCGGCGTTTCATCAGGTGCTTGCGAGAGACAACTAAAAGTCCATAATAGA CTAATTAGTTTATTTTTAGACGCCGGAGCCTGACATGCCCAGTAAGCCCAACGTGATCGACCAAGCCCAGGCTCGCGAGCTGCTGACACGCATCGACGTG CCGCAAATCCTGCGCAAACTGTTTCGCGACCTCGCCGCCGGACTCGCCGTGCAACCGGCGCAGCAACTGGTGGAATTCCCGCAAGGTGCCGGCGACTTCA TCAATTACCTGGGTGTGCTGGCCGAAGATGGCGTGTACGGGGTCAAGACGTCACCGTACATCGTTCGAGAACAGGGGCCGTTGGTGACAGCGTGGACGCT GTTGATGTCGATGCAAACCGGTCAGCCGTTGCTGCTGTGCGATGCCGGCGAACTGACCACCGCACGTACCGCCGCGACCACCGCCGTGGCGGTCGACGCC
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MTVLKALKKMFGKSEAEQLAPVPSAPSHAPGPRSEAPKAEHPAPLATPKPEPQPATAAEPVRAEAPKPARPRREPKPKAPVIPWKLEDFVVEPQEGKTRF HDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYT GLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAK QWTTDPAIVEIEVTNVANENVEQHIYAVAAADKYKLLFNLVNDNGWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL VATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTHLLRAVERKRPQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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