Pseudomonas sp. H1h, U862_RS0119760

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. H1h Contig22, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTCGGCCTGATGCAGCCTTGGCGTTTCATTCGCATCAGCGACCGTGCCTTGCGCGGGCAGATCCAGAACCTCGTCGAAGAAGAACGCATCCGTACAGCCA TTGCCCTCGGCGAGCGCAGCGACGAGTTCATGAAGCTCAAGGTCGAAGGCATCAACGATTGCGCCGAAGTGCTGGTCGCGGCGCTGATGGATGATCGCGA ACGGCACATTTTCGGGCGTCGTACGCTGCCGGAAATGGACATGGCGTCGTTGTCCTGCGCGATCCAGAACCTGTGGCTGGCGTCCCGTGCCGAAGGACTG GGGATGGGCTGGGTCTCGCTGTTCGAGCCGCAGGCGCTGGCCAATCTGCTGCAACTGCCGGTCGGTGCCAAGCCGTTGGCGGTGTTGTGCCTGGGCCCGG TCAAGGAATTCTATCCGGCGCCGATGCTGGTACTCGAAGGGTGGGCGCAGGCGCGTCCGCTCAATGAGTTGCTGTATGAAAATTATTGGGGAGTGAGTCA
DNA Sequence for Gene
>U862_RS0119760
ATGAGTGTGGCGTTGTTGAGTGTCGCTGCAGTCGCGCTGGATGCGCTGCTGGGTGAACCGAAACGCTGGCATCCGCTGGTGGCGTTCGGCAATTTCGCCG GGCGCATCGAGCGACGTTTCAATGCGGGCGGCCGTGGCTGGCGCAGTCACGGAGTCACCGCGTGGGTGATCGCGGTGCTGCCGCTGACGTTGCTCGCCAC CGCATTTTCCTGGGCGCCTTACGTGGGCTGGATCGTCGAGATTCTTGCGCTGTATTGCGCCCTGGGCATGCGCAGTCTTGGCGAGCACGTCGAGCCTGTG GCCAAAGCCCTGCGCAGTGAAGATCTGGAAGAGGCGCGCCAACGCGTCGGCTATCTGGTCAGCCGCCAGACCAGCGAACTGGACAGCACCGCCGTCGCCC GTGCCGCTACCGAGTCGGTGCTGGAAAACGGCAGTGATGCGGTGTTCGCTGCGCTGTTCTGGTTTGTCGTGGCCGGTGCGCCGGGCGTGGTGCTCTATCG CTTGAGCAACACGCTCGATGCAATGTGGGGTTATCGCAACGAACGTTTCGAGCGTTTCGGCTGGTGTGCGGCAAAAATCGATGACGTGCTCAACTACATT CCTGCACGGCTGGTGGCACTGACCTACGCGCTGTTGGGCAACACCCGGCTCGCCTGGAAATGCTGGCGCACCCAGGCGCCGAAATGGGACAGCCCCAATG CCGGTCCGGTGATGGCTGCCGGTGCCGGTGCGCTGAATGTCGAGCTGGGCGGCCCGGCGATCTATCACGGTGAACTGCACGACCGTCCGCAGCTGGGCGA AGGTGCGCCGGCGGATGCCGATTCGATTGATCGCGGCTGGCAATTGGTCCAGCGCGGGGTATGGTTATGGCTGCTGATTCTCTGCGTGGGGGCTGAATTC TATGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACGGTGGCCGGCTGCGCAAGGCTGCACTCGATTACGGTATCGCCGAGGCCGACTGGCTCGACCTGTCCAGTGGCCTTGCGCCGTGGCCGTTTGCGGTT CCGGAAATTCCGTTGCGCGCTTGGGCGCGTCTGCCGGAAACCGACGATGGCCTGGAGCAGGCCGCGTGCGATTACTACGGCGCCTCCCAGGTGTTGCCGG TGGCCGGCTCGCAGATGGCGATCCAGTTGCTGCCGCGTTTGCGCCGTGCCGGCAAGGTCGGCGTGTTGTCACCGTGTTATGCCGAGCACGCCGAAGCCTG GCGCCGCAGTGGTTACATCGTGCGGGAAGTGCTGGAGCAGGAGGTCGAATTTTTTCTCGACAGCCTCGACGTGCTGGTCGTGGTCAATCCGAACAATCCG ACCGGCCTGAGCCTGACCCCGGCGCGACTGCTGGACTGGCACGCGCGGCTGGCCCAGCGCGGCGGTTGGCTGGTAGTCGATGAAGCGTTCATGGACAACA
Amino Acid Sequence
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGNFAGRIERRFNAGGRGWRSHGVTAWVIAVLPLTLLATAFSWAPYVGWIVEILALYCALGMRSLGEHVEPV AKALRSEDLEEARQRVGYLVSRQTSELDSTAVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWCAAKIDDVLNYI PARLVALTYALLGNTRLAWKCWRTQAPKWDSPNAGPVMAAGAGALNVELGGPAIYHGELHDRPQLGEGAPADADSIDRGWQLVQRGVWLWLLILCVGAEF YA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site