Pseudomonas sp. H1h, U862_RS0117945
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig19, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGACGTCTGGGAACACGCTTACTACATCGACTACCGTAACCTGCGTCCGAAGTACGTTGAAGCGTTCTGGAACCTGGTCAACTGGAAGTTCGTTGCGG AGCAGTTCGAAGGCAAAGCCTTCACCGCTTAAGCTGCGTGCGAGTCAAAAAACCCGGCATTGCCGGGTTTTTTTATGCCTTTGGTTTCTCCAGACGCTGC CCCAGGCTGCGATCTTGATCAGTGGGTAGCGTGTTTCCTACCAGGAAAGCAGCCTTCGCCCCCTTGCTGCCACGCCATGGCGGGCTAACATCAAACAGAG GAAATTTTCTCCCGTTCCCCTCAAGTTGCAGGCTCAAACTACCGACACAGTACGATCAGGGTAAGAACTCCAGGCAGCTGCATTTCGGCCAACGCCACAG GCAAATATCCCTGGGCTTGATTGTCCCTTTGACTGCCAACACGGGATTGCCAATACTCATGGCAACTTGACGCTACCCGCACGGAACAAGGAATAACCCT
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| DNA Sequence for Gene |
>U862_RS0117945
TTGAAGCTGGAACTCAAGAACAGCTTGTCGGTGAAGTTGCTCCGGGTCGTGCTCCTTTCGGCATTGATCGTCGGCGTTGTCTTGAGCTGTGCCCAGATCG TCTTCGACGCCTACAAGACCCGCCAGGCTGTGGCCGGCGACGCCCAACGGATCCTCGACATGTTCCGTGACCCATCGACCCAGGCCGTCTACAGCCTGGA CCGGGAGATGGGCATGCAGGTGATCGAAGGCCTGTTTCAGGACGATGCCGTGCGTCAGGCCTCCATCGGCCATCCCAACGAGGCGATGCTCGCGCAAAAG TCCCGTGAGTTGCAGCATTCCAACAGCCGCTGGCTGACCGACCTGATCCTCGGCCAGGAGCGCACCTTCACCACACAATTGGTCGGGCGCGGTCCCTATA GCGAGTATTACGGCGACCTGAGCATCACCCTCGACACCGCCACTTACGGCGAGAGCTTCATCGTCAGTTCGGTGATCATTTTCATTTCCGGCGTATTGCG CGCCCTGGCCATGGGCCTGGTCCTGTACCTGGTCTATCACTGGCTGCTGACCAAACCGCTGTCGCGGATCATTGAGCACCTGACCGAAATCAATCCGGAT CGCCCCAGCGAGCACAAGATTCCGCAGCTCAAGGGCCACGAGAAAAACGAACTCGGCATCTGGATCAACACGGCCAACCAGTTGCTCGAATCCATTGAAC GCAACACCCATCTGCGCCATGAAGCGGAAAACAGCCTGCTGCGCATGGCTCAGTATGACTTCCTCACCGGCCTGCCCAACCGCCAGCAATTGCAGCAGCA ACTGGACAAGATTCTGGTGGATGCCGGCAAGCTGCAACGCCGGGTCGCGGTGTTGTGTGTGGGGCTGGATGACTTCAAGGGGATCAACGAGCAGTTCAGC TACCAGACTGGCGATCAGTTGTTGCTGGCACTGGCCGATCGCCTGCGCGCCCACAGTGGCCGCCTCGGCGCCCTTGCCCGTCTGGGTGGCGACCAGTTCG CCCTGGTGCAGGCCGATATAGAACAGCCTTACGAGGCGGCGGAACTGGCGCAGAGCATCCTCGATGATCTGGAAGCGGCGTTTGCCCTCGACCATCAGGA AATCCGCCTGCGCGCGACCATCGGCATTACCCTGTTCCCCGAGGACGGCGACAGCACCGAGAAGCTGTTGCAGAAGGCCGAGCAGACCATGACGCTGGCC AAGACCCGTTCGCGCAACCGCTATCAGTTCTATATCGCCAGCGTCGACAGCGAAATGCGCCGCCGCCGCGAACTGGAAAAAGACCTGCGCGATGCGCTGA TTCGCGATCAGTTCTATCTGGTCTATCAACCACAGATCAGCTACCGCGATCACCGTGTGGTCGGGGTCGAAGCGCTGATTCGCTGGCAGCACCCGGAACA CGGGCTGGTGCCGCCGGACCTGTTCATCCCGTTGGCCGAGCAGAACGGCACGATCATCGCCATCGGCGAGTGGGTACTCGATCAGGCCTGCAAGCAATTG CGCGAATGGCACGATCAGGGTTTCGTCGATCTGCGCATGGCGGTCAACCTGTCCACCGTGCAACTGCACCACGCGGAGCTGCCACGGGTGGTCAACAACC TGCTGCAGATCTACCGCCTGCCGCCGCGCAGCCTGGAACTGGAAGTCACCGAGACCGGCCTGATGGAAGACATCAGCACCGCCGCGCAGCATCTGCTGAG CCTGCGCCGCTCCGGGGCACTGATCGCCATCGACGACTTCGGCACCGGCTATTCATCGCTCAGCTATCTGAAAAGCCTGCCGCTGGACAAAATCAAGATC GACAAGAGCTTCGTCCAGGACCTGCTGGATGACGACGACGATGCGACCATCGTTCGCGCGATCATTCAACTGGGCAAGAGCCTGGGCATGCAGGTCATCG CCGAGGGCGTGGAAACCGCCGAGCAAGAGTCCTACATCATCTCCGAAGGCTGTCACGAAGGTCAGGGTTATCACTACAGCAAGCCGCTGCCGGCCCGGGA ACTGAGCGCCTATCTCAAACAAGCCCAGCGCAGCAACGCGGCGATCCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCAGCGCATAACCCTCGGCTAAACAAGAAATATTTCCAGCCACAGCCCTTTACACATAATGCGAAAGATTTGCATTATGTCGCAGCTTTGCGCACCCCC GCGCCCTGTCCATTCAATTACCGAAGCAGGATGTTCGCCATGATTCGTATGCCTCTGGCTACCGCCAGTCTGCTGGCCATCGCTATTTCCCTCGCCGGTT GCGGCGAAGGCAAAGACAAGGCTGCCGCCCCGGCCGCGCCGACTCCGGCCGCCAGCACCGCCGCTGCAGCAGCACCTGCCGCCGCCGGTAAAGTCGATGA AGCCGCCGCCAAGGCTGTGGTCGCGCACTACGCCGACATGGTCTTCGCCGTCTACAGCGATGCCGAATCCACCGCGAAAACCCTGCAAACCGCTATCGAC GCGTTCCTCGCCAAGCCGAACGCCGAGACGCTGAAAGCCGCTCGCGCTGCCTGGGTTGCCGCTCGCGTGCCGTATCTGCAGAGCGAAGTGTTCCGCTTCG
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVAGDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRQASIGHPNEAMLAQK SRELQHSNSRWLTDLILGQERTFTTQLVGRGPYSEYYGDLSITLDTATYGESFIVSSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPD RPSEHKIPQLKGHEKNELGIWINTANQLLESIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLCVGLDDFKGINEQFS YQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAAFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KTRSRNRYQFYIASVDSEMRRRRELEKDLRDALIRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACKQL REWHDQGFVDLRMAVNLSTVQLHHAELPRVVNNLLQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQESYIISEGCHEGQGYHYSKPLPARELSAYLKQAQRSNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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