Pseudomonas sp. H1h, U862_RS0110825

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. H1h Contig13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAGTGGCAGAGCCAGCTCAATCTGCAATACAGCCCCGACCCGTTGCCGGCCATCGAACAGTTGCTCGGCACCGACGATTCAGCGGTGCGCGGCTATCGGG TCAGCAGCGCCTCCGGGGCCAGCGGCGCGATCTGGCGCAACACGTTGCGCCTGCCGCTGCGCACCGACTGGCCGGTGCAGATCACCCCGCGCGTGGGCCT GGACAACGGCTGGCTCAAGGCCGACCACGGTGCGCCAGGTCAACGCCTGAGCGGCGCCAGCGTCGGGCTGAACCTGGGCTGGAAGAATCTGCAAGTGGAC GTCGATTACCAACGCGCCCTCAACACCCCCAATGGTTTGCAGCACGAGCCGGAGACCTGGCTGATGCGCGTGGGGTTGCAGATATGAGCACCACCAAGAC TCAACAAGCAGTGAACAGACAGCCGTCGGATCTGAGCGCGACAGCCACGGCCAATACTCAATCGCGCGCCGTGATGCCGTACTTACATGGAGACGTTTTT
DNA Sequence for Gene
>U862_RS0110825
ATGCCAGCACACACCTTTGCATTCCATCTTTCTCCTCGGGGCAAATTGCGCTGGGCGATCGCCAGCCTGTTCTTCGCCGTGCACCTGCCCAGCGCCATCG CCGGCGGTGTCGTGGTCGCCCCCGGCCCCGGCGGCACCGCGCAATTGCAGACGCAGGGCGGCGTGCCCATCGTCAATATCGTCGCGCCCAACGGCTCGGG CCTGTCGCACAACCAGTTCCTCGACTACAACGTCGACCGTCAGGGCCTGGTGCTGAACAACGCCTTGCAGGCCGGCCAATCGCAGCTCGCCGGGCAACTG GCGGCCAACCCGCAACTGCAGGGCCAGGCGGCCAGCGTGATCCTCAACGAGGTGATCAGCCGCAACCCTTCGGCGATCAATGGTGCCCAGGAAATCTTCG GCCGCGCCGCCGATTATGTGCTGGCCAACCCTAACGGCATTTCGGTAAACGGCGGCAGTTTCATCAACACGCCGAACGCCAATCTGGTGGTCGGTCGTCC GGAATTGAACGACGGCAAACTGCAGGCTCTGAATACCCGTGACGCCAGCGGTCAGTTGCAGATTCACAGCGCCGGCCTGCGCAACGGCGAGGGCTCGATC AACCTGATCGCTCCGCGTATCGACAGTCAGGGCCGCATCGATGCGCGCGATCAACTGAACCTCACGGTCGGGCGTAATCAGCTGGACTATGCCAGTGGTC AGGTGAAAACCGTGGACCCTGCGGGCAACACCAATGACCAACGCATCGACGCCAGCCTGTTCGGGGCGATGCAGGCCGGGCGCATCAACATCGTCAGCAC CGCCGAAGGTGCCGGTGTGCGCGTGGGGGCGGTGCAAGTGGCCGGGCGTGACGGCGTGCAGATTCGCTCTGCCGGCGACCTCAGCGTCAGCGGCGAAGCG ATCCCCAACAGCCTGGAAGTGACCCGTGCCGGTATCCGCAGCAGCCAGGGCGATGTCGGCCTGCACAGCGGCAAGGACCTGACGCTGGCCGCTGCCGATG TCAGCGGTCGCGACGTCAGCGTCGATGCCAAGCGCAACCTGACCCTGAGCACCGTCGAAAGCCGCAAGCTCCAGGAGAAGCGCGAGAACTGGAGCAACAG CACCATCGGCATCACCTGGGAAACCTACGACCGCACCCAGACCGACAGCGATTCGCGCCAGCATGGCAGCCAGATCGTCGCAAGCCGCGACGCCAAACTG TCCTCCGGCAAAGACACTGAACTCAAAGCCGCCAAGGTGGAAGCCGCGAAGAATCTCGATGTGCAGAGCGGCGGCGACCTGCGCCTGACCGCAGCCACCG AAAGCCACACCCAGACCGATCAGGGCAACCACCGCAAGCACCTGTGGAAGGCCGACTGGAAAACCAGTAGCGAAGACCAGCGCAGCATCGGCAGCCAGTT GAAGGGCGGCAATATTGCCCTGCAAACCGCTGCCTTGTTGCGCTCCGAGGGCGCTGAACTGAACAGCGCCGGCGATGTGAAACTGGCGGGCAAGCAAGTG GACGTCACCACGGCCACACGCACCCATCGCAGCAATGACAACAGTTATTCCGGCGACCTGGTCGGCGGTGGTTTCTTCGGCAAGACCGGTGACGCCGACA AGGGCCAGACCCAGCACCAGGGCAGCAAAATCAACGCCACCGGCAAACTGCTCGTCAAGGCTGACGACGTGCGCATCAGCGGCAGCCAGGTCCGTGGCGG CACCGAGGCCAGCGTGATCAGCGACCAGGGTTCGCTGGTGATCGACGGCGTGCAGGACACCTCGCACAGCAACAACCACGACAAGGACAGCAAGTTCTTC GGCATCACCAAGGACGAGTCGCGGCAGAACGCCAAGGACAGCACCACGGTGCGCAGCGAACTGGTCTCGGACAGCAACCTCAAGCTCAAGAGCGCCAAGG ACATCGAGGTGGCCGGCTCCACGGTCAAGGCCGGCGCTGAGCTGACGGCGGACGCGGCGGGTGATGTGAACGTGCATGCGACGCAGAACACCCACGACAG CAGCTCGACCACCGAGACCCGTGGCTTCGACGCCTACGCCAAGGAGCAAACTGCGGAGCAATACCGCGCCGGGGTGCATTACGAAGACAAACAGCAGACC GTCACCCGCAACGACGTCAACCAGCAAGGCTCAAGCCTCAGCGGTGGCAGCGTGCAGGTGAATGCCGGCGGCGATCTGACAATCAAGGGCAGTGAGGTCA AATCCACTGCGGGCGACACCACGCTGAGCGGCAAGAACGTGTCGTTGCTGGCCGAGCAGGACAGCCACAAAACCTCGACCGATACCTCCAGCACCGGCGG CGGTTTCTACTACACCGGTGGCCTCGACCGCGCCGGCAGTGGCGTTGATTTCGCCCACAGCACCACACAAGACACCAGCAGCAAGACCACCGCGCAAACC ACCGCTGTGCAGAGCAGCGGCGCCCTGAACATCAACGCCGACAAACTGGTAACTGAAGGCGCGCAGGTCAAGGCCGGCAACGGTCTGAACGTCGTGGCCA ACGAGATCGACAACCGCGCGGCCAGTAACTCTGATAGCAGCACGCACAGCCAGAGCAACTGGTCGGCGGACATCGGCGCCAATGTCGAGTACAAGGATGT CGCCCGTCCGATCGCAGGTGCGGTCAAGGATGTGCTTAACGGCAAGGTGCCGGACAAGGAAGCCCTGAGCAATCTCGGCCAGCCGAACGTCGGCATCGAC GTCGCGATCGGTCACGGCAGCGCGGACAAGTCCGAGCAGAACAGCAACGCGGTGGTCAGCCGTTTCGACGGTGGCAGCGTCGACGTGAAAACCGCCGGTA CCCTGCACGACCAGGGCACGCAGTACAGCGCCAGCACCGGCAAGGTCAACATCAGCGCCGACAAACTGGTTGCCGATGCCGCGAGCAACACCCACAGCAG CACCGACAACTCGGTGGACGCGAAGGTCGACGTGCGCGTTTACACCAAGACCGGCGAAGACGTGAACGTCGCCGGCAGCGGCGCGGGCGGCAACCGCTAC AGCAGCAAGGACAGCAGCACGGCGGTGGTTGGCGGCTATGCCGGCAACCAGGGCGTGAACATCAATGTCGGGGGTGACGCGCAGTTCGCCGGCAGCCGTT TCGATGGCGGGCAGGGCGGTGTGAGCATCAAGACTGGCGGCGATCTGGCGCTGAATCAGGCCAACGACCGCCAAAGCAGCAGCGACTCCAGCCTGCGCGG CAACGGCTCGCTGACCGTCGGCACCTTGCCGGGCACCGATGGCACCAACGTCGACCTCGGCGCCGGGTTCCAGCTCGACCACACCGGCAAGCAGACCAGT GACAGTCAGGCCCACGTCGCCAGCATCAGCGGCAACGGTGCGGTGCAACTGAGCAGCGGCGGCAATCAGGTCCAGCAAGGCACGCAGATCGACAGCGCGG GCGCCATCGATCTGCACGCTGACGGCAAGCTTGACCTGCAAGCGGCCACCGATACGCATACCGCAACCGGGAGCAATCTCGGCGGCGGCTTGAAGGGTGG CGGCAGCAAGTCCAGTAGCGAGAAGAGTCGGGATCAGGGCGGCAATCTGAGCGGCAACTTCAACATCGGTCGGGTCAACGAAAACTCGCAAACCCTGACC GGTGGCCAGCTCAACAGCCACAGCGGTGTCGCGTTGAGCAGTGATGCAGTGCACCTGCAAGGCACGCAAGTCGGCGCGCCGCACGTCACCGTCGATGCGC AGAAGGGCGGTTTCGTCCAGGAGTCGGCGCAGTCCACCGAGAGCCGCAACAACTGGAACGTCGCGCTGAATGCCGGCGGTAACCTGAGCAGCAAGACCCC GACCGCCGCTGACGAAAAGGCCAGCAGCGATCACGGCTTCAACGCCGGGGCCAAGGTTGGCGTCGATTACCTGCAAGGCACCACCCAGCAGAACAGCCAG ATCAAGGCTGACACTGTGGTGCTGAACAGTGCCGGTGATGCACAGCTTTCGGGTGCGCGGATCGACGCGAATACGGTCAGCGGCAAGGTTGCCGGTGATC TGACTGTCGACAGCCGTCAGGACTCGAAGACCCAAGCCAAGGTTGATGTTGATCTGGGCCTGACCGCGAAGAAAAATCCACCGAGCGACAAGGAAAAACT CGCTGGCACCGACTACAAGCCGACGCTGAAGGCGCAGGGCGAATACACGCACAAGGACAGCGTGGCGCAGGCCTCCGGCATCAGTGGCAATCAAGGTGTG AAGTTGAACGTTGGTGGTGGCACCCAACTGACCGGCGCGCGGATATCGGCGCCTGAAGGCAAGGTCGATCTGGGCGGTTCGAAGGTGGGTAGCAGCGATC TGGTCAACCGTGAGTACGGCGTGAAAGCCGGGTTGGACCTGCCGCAGAAAACCGAGGAGAACGCACCGAAGGTGTCCTTCGATAACGGCAATCTGAAAGT CGGTCCGGTGACCCTGAGCGGCAATCTGGACAGTCAGACCCTGCAAGCCGGGATCGACGAAAAAGGCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACTACCGCTGTAAAAGCTGTGGGAGCGGGCTTGCTCGCGAAGGCGGTGATTCAGTCGATAAATCAGCTGACTGAATCGACGCCTTCGCGAGCAAGCCC GCTCCCACATTAGTCTTCTGTCTCGACCAGATCCGACTATTAGTTCGACGCCTTCGCCTTACCCGCATTCAGCAGCACGATCACCGCCAGCAGCGCGGAC AGGATCGAACCCAGCAACACGCCAACCTTCACCGAGTCGACCAACTGCGGTGCGCCCGGGAACGCCAGCGCACCGATGAACAGGCTCATGGTGAAGCCGA TCCCGCAGAGCAGGGCGACACCGTACAGTTGCAGCCAGCTGGCACCTTGCGGCAGTTGCGCCAGACCACTGCGAATCGCCAGTGCGCCGAGGCCGAGGAT GCCGATCTGCTTGCCGAACAACAGGCCCAGCGCCACGCCAAGCGGTACCGGCTCGAGCAGGTTGCTCGGGGAAATGCCAGCCAGCGACACGCCGGCGTTG
Amino Acid Sequence
>filamentous hemagglutinin
MPAHTFAFHLSPRGKLRWAIASLFFAVHLPSAIAGGVVVAPGPGGTAQLQTQGGVPIVNIVAPNGSGLSHNQFLDYNVDRQGLVLNNALQAGQSQLAGQL AANPQLQGQAASVILNEVISRNPSAINGAQEIFGRAADYVLANPNGISVNGGSFINTPNANLVVGRPELNDGKLQALNTRDASGQLQIHSAGLRNGEGSI NLIAPRIDSQGRIDARDQLNLTVGRNQLDYASGQVKTVDPAGNTNDQRIDASLFGAMQAGRINIVSTAEGAGVRVGAVQVAGRDGVQIRSAGDLSVSGEA IPNSLEVTRAGIRSSQGDVGLHSGKDLTLAAADVSGRDVSVDAKRNLTLSTVESRKLQEKRENWSNSTIGITWETYDRTQTDSDSRQHGSQIVASRDAKL SSGKDTELKAAKVEAAKNLDVQSGGDLRLTAATESHTQTDQGNHRKHLWKADWKTSSEDQRSIGSQLKGGNIALQTAALLRSEGAELNSAGDVKLAGKQV DVTTATRTHRSNDNSYSGDLVGGGFFGKTGDADKGQTQHQGSKINATGKLLVKADDVRISGSQVRGGTEASVISDQGSLVIDGVQDTSHSNNHDKDSKFF GITKDESRQNAKDSTTVRSELVSDSNLKLKSAKDIEVAGSTVKAGAELTADAAGDVNVHATQNTHDSSSTTETRGFDAYAKEQTAEQYRAGVHYEDKQQT VTRNDVNQQGSSLSGGSVQVNAGGDLTIKGSEVKSTAGDTTLSGKNVSLLAEQDSHKTSTDTSSTGGGFYYTGGLDRAGSGVDFAHSTTQDTSSKTTAQT TAVQSSGALNINADKLVTEGAQVKAGNGLNVVANEIDNRAASNSDSSTHSQSNWSADIGANVEYKDVARPIAGAVKDVLNGKVPDKEALSNLGQPNVGID VAIGHGSADKSEQNSNAVVSRFDGGSVDVKTAGTLHDQGTQYSASTGKVNISADKLVADAASNTHSSTDNSVDAKVDVRVYTKTGEDVNVAGSGAGGNRY SSKDSSTAVVGGYAGNQGVNINVGGDAQFAGSRFDGGQGGVSIKTGGDLALNQANDRQSSSDSSLRGNGSLTVGTLPGTDGTNVDLGAGFQLDHTGKQTS DSQAHVASISGNGAVQLSSGGNQVQQGTQIDSAGAIDLHADGKLDLQAATDTHTATGSNLGGGLKGGGSKSSSEKSRDQGGNLSGNFNIGRVNENSQTLT GGQLNSHSGVALSSDAVHLQGTQVGAPHVTVDAQKGGFVQESAQSTESRNNWNVALNAGGNLSSKTPTAADEKASSDHGFNAGAKVGVDYLQGTTQQNSQ IKADTVVLNSAGDAQLSGARIDANTVSGKVAGDLTVDSRQDSKTQAKVDVDLGLTAKKNPPSDKEKLAGTDYKPTLKAQGEYTHKDSVAQASGISGNQGV KLNVGGGTQLTGARISAPEGKVDLGGSKVGSSDLVNREYGVKAGLDLPQKTEENAPKVSFDNGNLKVGPVTLSGNLDSQTLQAGIDEKG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site