Pseudomonas sp. H1h, U862_RS0110820

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. H1h Contig13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGCGTTGGGCTCAGGGTTTGGAGCATGGCTCAACCAACGGTTGCTGCGGCGCGGCTGCCACGCGCTGCAACTGATTCGCCTTGCCGCGATCTGCGCGCT GCTCGGGGGGCTGGGCGTGTGGCGGCTGCAGGACAGTGGCGCATTCGTGCTGCCGATGTTGCTGGTGGTGTTGGCTTTCGGCATGGCGATCCCGAATATT CTCGGTTCGGCGCTGGTCAATTATGCCGATCGCCTGGGCACCGCCGGGGCCCTGCTGGGGCTGCTTTATTACCTGCTGATCGGCGTCGGACTGATGCTCG CTGGCTGGGCGCAAGCCCTCGGGGAAACCCTGATGGCCTGCAGCGGCGTGGCCTTGCTGCTGACCTTCAAGGCTGATAAATCAAATGTTTAAGAAATGTA AGCGCTGTAGGAAGCATCTTGCATTTGTGTAGGAAGGCTCTGACTATCACCAGCATTGATGAAGTGGCATTACGCCATTTTATGATTGCAAGGATGTTGC
DNA Sequence for Gene
>U862_RS0110820
GTGCCGTATTTGCTTCGCGCTGTTTTTCGTCGTCGTTCCACGCGTTGCCCGCTGTTGTCGGCCTTGGTGTTGAGTGCGTGTGCCTCCTCGATTCAAGCGG CTGACCCTGTTGCGCCGGGCCAGGAAGTGCTGCGCCAGCAGCAACAGCAACAGCGCGATCTGCAACAACTTCAGCTGGAGCAACGCAAGCGCCAATTGGA GCGCGGCGCGTTCGGCCCGGCGCCCGCCACACCGGCGATCCCGCAGACAGTCGCCCCCGATGAACGCTGCTGGCCGCTAAGTGGCACGCGCATTGGCGGC GTCACCCTGATCGACAGCGACAAACTCAACGCACGGATCAAACCGTTGCTGGCGCCGTGCATGGGCGTCGGCCAGATCAACCATCTGCTGGCGACCATCA CTGCGATCTACGTCGAGCAAGGGTACATCGCCAGCCGCCCGTACCTGTCAAGCGCGCCGGCGGCGGGGCAGTCGCTGGATATCATGATCGACGAGGGCTA CATCGAGTCCATCGAACTGGCCGATCAGAGCCTGCCCGTGTCATTGGGTGGCGCGTTCCCGCACATGCTCGGCCAGCCGTTGAACCTGCGCGATCTGGAG CAGGGTCTGGATCAGTTGAACCGCTTGCGCTCGATCGACCTGACTGCCGACATCGCCCCCGGCAGCCAGCCCGGTGCGTCGCGGATCATCCTGCGTTCGC GCACCTCCGGGCAGTCGCGCTGGGCGCTGGGGCTGGGGATCGACAACCTCGGCAGCGCCAGCACCGGGCGTGATCGCAACAGCGTCAGCCTGAGCTTCGA CAGCCCGCTGCAACTCAACGATCTGTTGAGCCTCAGCGCCAGCGATACCTTGAATCAGGGCGACCGTTACAACCGCAACGCCAGCCTGTATTACGCGATT CCTTACGGCTACTGGACCTACAGCGTGTTCGCCAGCCACGCCGAATACCGCGCGCCGTTCAAACTGCCCAGCGTGACTTTCCACAGCACCGGTATCACCG ATCAACTGAGCCTGCGTGCCGACCGCGTGTTGTGGCGCGACCAGAGTCGCCAGCTCAGCGCCAACCTGCAACTGGCGCACAAGGACGTCGACAGCTATCT GGAAAATGCTCGCCTGGGCATTCAGAGCCCGACCCTGACCGTGGCCGAAGCCGGGCTCAATCTGTTCTGGCTCGACCGTGCGGTGTGGAACCTCGACTTC ACCTATTCACAAGGCTTGCGCTGGCTGGGCGCCGATGATGACGCCAATCATGCGGTCAATAACGTGCCCAAAGCGCAATTTCGCAAGTATCGCGCCGGCC TCAGCCAGTGGCGCAACGGCCAGTTCGGCGCGCAGGCCTGGCAGTGGCAGAGCCAGCTCAATCTGCAATACAGCCCCGACCCGTTGCCGGCCATCGAACA GTTGCTCGGCACCGACGATTCAGCGGTGCGCGGCTATCGGGTCAGCAGCGCCTCCGGGGCCAGCGGCGCGATCTGGCGCAACACGTTGCGCCTGCCGCTG CGCACCGACTGGCCGGTGCAGATCACCCCGCGCGTGGGCCTGGACAACGGCTGGCTCAAGGCCGACCACGGTGCGCCAGGTCAACGCCTGAGCGGCGCCA GCGTCGGGCTGAACCTGGGCTGGAAGAATCTGCAAGTGGACGTCGATTACCAACGCGCCCTCAACACCCCCAATGGTTTGCAGCACGAGCCGGAGACCTG GCTGATGCGCGTGGGGTTGCAGATATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACCACCAAGACTCAACAAGCAGTGAACAGACAGCCGTCGGATCTGAGCGCGACAGCCACGGCCAATACTCAATCGCGCGCCGTGATGCCGTACTTACA TGGAGACGTTTTTATGCCAGCACACACCTTTGCATTCCATCTTTCTCCTCGGGGCAAATTGCGCTGGGCGATCGCCAGCCTGTTCTTCGCCGTGCACCTG CCCAGCGCCATCGCCGGCGGTGTCGTGGTCGCCCCCGGCCCCGGCGGCACCGCGCAATTGCAGACGCAGGGCGGCGTGCCCATCGTCAATATCGTCGCGC CCAACGGCTCGGGCCTGTCGCACAACCAGTTCCTCGACTACAACGTCGACCGTCAGGGCCTGGTGCTGAACAACGCCTTGCAGGCCGGCCAATCGCAGCT CGCCGGGCAACTGGCGGCCAACCCGCAACTGCAGGGCCAGGCGGCCAGCGTGATCCTCAACGAGGTGATCAGCCGCAACCCTTCGGCGATCAATGGTGCC
Amino Acid Sequence
>ShlB family hemolysin secretion/activation protein
MPYLLRAVFRRRSTRCPLLSALVLSACASSIQAADPVAPGQEVLRQQQQQQRDLQQLQLEQRKRQLERGAFGPAPATPAIPQTVAPDERCWPLSGTRIGG VTLIDSDKLNARIKPLLAPCMGVGQINHLLATITAIYVEQGYIASRPYLSSAPAAGQSLDIMIDEGYIESIELADQSLPVSLGGAFPHMLGQPLNLRDLE QGLDQLNRLRSIDLTADIAPGSQPGASRIILRSRTSGQSRWALGLGIDNLGSASTGRDRNSVSLSFDSPLQLNDLLSLSASDTLNQGDRYNRNASLYYAI PYGYWTYSVFASHAEYRAPFKLPSVTFHSTGITDQLSLRADRVLWRDQSRQLSANLQLAHKDVDSYLENARLGIQSPTLTVAEAGLNLFWLDRAVWNLDF TYSQGLRWLGADDDANHAVNNVPKAQFRKYRAGLSQWRNGQFGAQAWQWQSQLNLQYSPDPLPAIEQLLGTDDSAVRGYRVSSASGASGAIWRNTLRLPL RTDWPVQITPRVGLDNGWLKADHGAPGQRLSGASVGLNLGWKNLQVDVDYQRALNTPNGLQHEPETWLMRVGLQI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site