Pseudomonas sp. H1h, U862_RS0110630

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. H1h Contig13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGGCTGGAGATCGCGCACAAGGTCAGCGTCAAGGACGGCAATTTCACCACCACCGACCTGTCCACCGGTCAGCGCAAGCGCCTTGCGCTGGTCAATGCGT GGCTGGAAGAACGCCCGGTGCTGGTGTTCGACGAGTGGGCGGCCGATCAGGACCCGACCTTCCGCCGCATCTTCTATACCGAGCTGTTGCCCGACCTCAA GCGACTGGGCAAAACCATCATCGTGATTTCCCACGACGACCGCTATTTCGATGTCGCCGATCAACTGGTACGCATGGAGCGCGGCCGGGTGGTCAGTGAA TTGACCCCGGCCTGACACACCCGCCAGACGCCTTGCGCGATTTGATCCGCAAGGCGCCCCCCCTCTTTTCAGCGCACAGAACCGGACCGGCAGCGATTTA TTTGTCGGGTTTGTTTCCGGTTTTTCGCCATCACTCCGTCTTAATAATAATTCCTATTAACAAAAACTCTGCACAACACGTTCAGGAGCTCAGGCAAGTA
DNA Sequence for Gene
>U862_RS0110630
ATGCACCCTCTTCCACGCCGCACACCTCTCGCGCTGGCCGTACAGCGTCCGACTTTGCATAAAACCCTGCTGACCAGTGTCCTGCTGACCGCCACCTTGC TGGGGAGCTCGATGGCCAATGCGGCACCGGTCAAGGTCAACATTGCGGTGCAACCGCTGTCCAGCGCGCTGACCGAACTGGGCCTGCAAACCAACCTGCA GATCCTCTACAGCCCGGACCAGGTGGCCGGGATCAAATCCCGTGCGGTGTCCGGTTCGCTGGAGCCTTCCGAAGCGCTGGCCGCAATGCTCAAGGACAGC GGGATTTCCTTCCAGATCAATGGCAGCAGCGTCACCCTGGTCTCGGGCGGCGCAGGTTCGACCCTGCAACTGGGCGCGACCACCATTTCCGGCCAGGCGC TGGGCCTGACCACCGAAGACAGCGGCTCCTACACCACCGGCGCCACCACCACCGCGACCAAGCTGCCGCTGACCATTCGCGAAACGCCGCAATCGGTGAC CGTGGTCACCCGTCAGCAAATGGACGACCGTGGCGAAAAGAACATCGGCGACGTGCTGCGCAACACCCCCGGCATCTCCGTGCAGCAATATGACAGCGAC CGCACCGAATACGCGACTCGCGGCTTTGCCATCACCAACTTCCAGTACGACGGCGTCAACAACGTCTACGACGGCGTGTACGACGAAGGCGCGACCCACG TCGACATGGCCACCTACGATCGCGTCGAAATCATCAAGGGCGCCACTGGCCTGATGACCGGCTCGGGCGACCCGTCGGCCACCGTCAACCTGGTGCGCAA GAAGCCGACCAAGGAATTCAAGGCGTCGGTCACCGGCACGGCCGGCTCGTGGGACAACTATCGCACCGAAGGCGATATCTCCGGCCCGCTCAACGACAGC GGTTCGGTGCGCGGGCGCTTCGTCGGCGCCTATCAGGACAAGAACTCCTACATCGATCACTACACGCAGAAAAAGGATGTGTACTACGGCATCCTCGAAG CCGACCTCAGCGAAGACACCTTGCTGACCTTCGGCATCGACAAACAGAGCGTGACCCCGCGCGGTTCGTCGTGGACCGGCAACCCGGTGTACTTCTCCGA CGGCGGACGGACTGACTTCCCGCGCAGCTTCAACCCGGGCGCCGACTGGAGCCGTCGCGATTTCGACTCCGTGACCTACTTCACCTCGCTGGAGCAGGCC CTGGCCAACGACTGGAAACTCAAGGTCAGCCTCAACGAAAAAATCACCGATCACGACACGCAACTGGCCTCGGCCAGCGGCGGCAATCCAAATCGCGCCA CCGGCGAAGGCATGTTCCTCTACTGGGGCCGCTGGGAAGGTCACCGCGTCCAGGATTCGGCGGACATCAACGTCTCCGGTCCATTCACCCTGGGCGGTCG CGAGCACGAACTGGTGGCCGGCATCATGGCCTCGCACTCGCGCCAGACCGGTGCGACGTTTGACACCAGCGCTTTCAGCCAGGTACCGGGCAGCATCTAT GACTGGAACGGCCATCTGCCGAAACAGGAGTTCCCGAAGAACGGCAAATACGAGCGCACCCAGAGCCAGAACGGCATCTACCTCGCCACGCGCCTGCGCC CGACTGACGACCTCTCGGTAATCCTCGGCAGCCGCCTGAGTACCTTCAAGTACAACGAGGACTACTCCTACAATGCGGGCACCGGCATGTCCGACACCCA TGCCAGCTACAAGGAACACGGCGTCGTCACGCCTTACGCCGGTGTGGTCTACGACCTCAACGACACCTACTCGGTGTACGGCAGCTACACCAACATCTAC CAGCCGCAGATTTACAAGGATGCCGACGGCAAGACCCTCGCGCCGGTCGAAGGCAACGCCTACGAAACCGGTCTGAAGGCCGCCTACTTCGATGGCCGCC TCAACGCCAGCCTGGCGTTCTTCCGCATCGAGCAGGACAACGTTGCCGAATCGATCGGCACCAACCCGGTGACCAACGAAGGCATCTACAAAGCCATCGA CGGCGCCACCACCAACGGTGTCGAACTGGAACTGGCCGGTGAACTGCAAGAAGGCTGGAACCTGTCCGCCGGCTACACCTACGCCCGTACCCGTGACCAG GACGAGCAACGGATCTACGGCTACCCGCTGTCCACCACCAAACCCGAGCACGTGTTCCGCACGTTCACCACTTACCGCCTGCCGGGTGTGCTGAACAAGG TCACAGTCGGCGGCGGTGTGAGCTGGCAGAGCGCGTTCTACGGCAAGATCTACAGCGCACCGGCCGGCGACTACACCCGCATCAAGCAAGGCGGCTACTC GCTGGTGGACCTGATGACCAAGTACGAGTACGACGAGCACCTGAGCTTCACCGTCAACGCCAACAACGTCTTCGACAAGAAGTACCTGACGGGCCTGGGC AACTTCGACACCACGTTCTACGGCGAGCCGCGCAACCTGCAACTCACCGCCAAGTACAACTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCACATCGCAAACGCCAATGCCCGCATCGCAAGATGCGGGCATTTTTTTTGTCCTGTCGTTGGCCTCGCGGGCTGTGTGTCGGGCACAAAAAAACCGCC ATTGCCGACTCGGCAATGGCGGTTCCGGGATCAGGTCAGAGGTGTGAGCGCACCCACTGCGCCACCTCGGCATGGATCGCCTCGACCTCACTCAGCAGCC CGGCCATGCGCAGGAAGTCGTGGGTCATGCCCGGTTGTTCGAGCAGGGTCAGATCATTGCCGGCGGCGCGCAGACGCTCGGCATAGGCACGGCCTTCGTC ATACAACGGGTCATGGCCGGCCAGGTACACCAGCGCCGGCGCGATGCCAGACAAGTCGTCCGCCAGCAACGGCGAGCAGCGCCAGTCGGCCAGATCTTCC GGGGTGCGGGCGTAATGTGCGTAGAACCAGTCCAGCGTCGGGGTCTCCAGCAGATAGCCTTCGGCGAAATCGCGATGCGAGGCGCGATGCGTCGTGGCGT
Amino Acid Sequence
>TonB-dependent receptor
MHPLPRRTPLALAVQRPTLHKTLLTSVLLTATLLGSSMANAAPVKVNIAVQPLSSALTELGLQTNLQILYSPDQVAGIKSRAVSGSLEPSEALAAMLKDS GISFQINGSSVTLVSGGAGSTLQLGATTISGQALGLTTEDSGSYTTGATTTATKLPLTIRETPQSVTVVTRQQMDDRGEKNIGDVLRNTPGISVQQYDSD RTEYATRGFAITNFQYDGVNNVYDGVYDEGATHVDMATYDRVEIIKGATGLMTGSGDPSATVNLVRKKPTKEFKASVTGTAGSWDNYRTEGDISGPLNDS GSVRGRFVGAYQDKNSYIDHYTQKKDVYYGILEADLSEDTLLTFGIDKQSVTPRGSSWTGNPVYFSDGGRTDFPRSFNPGADWSRRDFDSVTYFTSLEQA LANDWKLKVSLNEKITDHDTQLASASGGNPNRATGEGMFLYWGRWEGHRVQDSADINVSGPFTLGGREHELVAGIMASHSRQTGATFDTSAFSQVPGSIY DWNGHLPKQEFPKNGKYERTQSQNGIYLATRLRPTDDLSVILGSRLSTFKYNEDYSYNAGTGMSDTHASYKEHGVVTPYAGVVYDLNDTYSVYGSYTNIY QPQIYKDADGKTLAPVEGNAYETGLKAAYFDGRLNASLAFFRIEQDNVAESIGTNPVTNEGIYKAIDGATTNGVELELAGELQEGWNLSAGYTYARTRDQ DEQRIYGYPLSTTKPEHVFRTFTTYRLPGVLNKVTVGGGVSWQSAFYGKIYSAPAGDYTRIKQGGYSLVDLMTKYEYDEHLSFTVNANNVFDKKYLTGLG NFDTTFYGEPRNLQLTAKYNF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site