Pseudomonas sp. H1h, U862_RS0110400

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. H1h Contig13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATCAGCGTGATCTGCCGCGACGCCGCCGGTTTCAAAGGCCCGGCCCTGCTGCAGAACATTCTGGAAAGCGGTCTGCGTTTTGGCGAGATGGATATTTTCC ACCGTCACGAAAGCATGGCCGGCAACGGTGAAGTGCTGTTCTCCATGGCCAATGCGGTCAAGCCGGGCATCTTTGATCTGGACGACATCGACCATTTCAG CACCCCGGCGGTGAGCTTCTTCCTCGGCCTGCCAGGCCCGCGTCATCCGAAGCAGGCTTTCGATGTGATGGTGGCCGCCGCTCGCAAGCTGTCGCAGGAA CTGAACGGCGAGCTGAAAGATGACCAGCGCAGCGTTCTGACCGCGCAAACGATCGAGCACTACCGTCAGCGCATCGTCGAGTTCGAACGTCGCGCCCTGA CCCAGAAGCGCTGATTGATAAGATTGCCTCGTGATCAGAGGCAATCGGCAATATGGATTGAGCAGCCTCGGCTGCTCTTTTGCTTTATGAGAGAACACCC
DNA Sequence for Gene
>U862_RS0110400
ATGACCGCCGCCAAAAACCGCATTCTAGAGCTGCGCGCTGAACTCGATCAGCACAACTACCGTTACCACGTCCTCGACGAGCCGAGCATTCCGGACGCGG AGTACGACCGGTTGTTCCACGAGCTCAAGGCGCTGGAAGCGGCCAACCCGGAACTGATTACCAGCGATTCGCCGACCCAGCGGGTCGGCAGCGTGGCCCT GACCGCGTTCACCCAGGTGCGTCATGAAGTGCCGATGCTCAGCCTTGGCAACGCCTTCGAAGAAACCGACATGCGCGAGTTCGATCGCCGGGTGACCGAA GGGCTGGATCTGCCGGCCGGTGATCTGTTCGGTGGCGGCGCGGCGGTGGAATACAGCTGCGAACCGAAACTCGATGGCCTGGCGGTCAGCCTGCTGTATC AGGACGGCGTGCTGGTGCGCGGCGCCACGCGTGGCGATGGCACCACCGGCGAAGACATCAGCGTCAACGTGCGCACTGTGCGCAACATCCCGCTCAAGCT GCATGGCGAAGGCTGGCCTGCGACCCTGGAAGTGCGCGGTGAAGTGTTCATGTCCAAGGCCGGTTTCGAGCGCCTCAACGCCTCGCAACTGGAAGTCGGC GGCAAGACCTTCGCCAACCCGCGCAACGCCGCGGCTGGCAGCCTGCGTCAGCTGGATTCGAAGATCACCGCCAACCGCCCACTGGAATTCTGCTGCTACG GCATTGGTCAGGTATCTCACGATATCGCCGATACGCACATCGGCAACCTCAAGCAATTGCAGGCGTGGGGCATGCCGATCAGCCATGAGCTGAAACTGGC CAAAGGCATCGGTGAATGCCTGGATTACTACCGCGACATCGGCGAGCGACGTAACGCGCTGGCCTACGAAATCGACGGCGTGGTGTTCAAGGTCAACAGC ATCGCCGATCAGCGCGAGCTGGGCTTCCGCGCCCGCGAACCGCGCTGGGCGATCGCGCACAAGTTCCCGGCGATGGAAGAGCTCACCGAGCTGCTCGATG TGGAATTCCAGGTTGGCCGCACCGGCGCCGTCACCCCGGTGGCGCGTCTGAAGCCGGTCAAGGTCGCCGGCGTCACCGTGGCCAATGCCACGCTGCACAA TATGGATGAAGTGGCGCGTCTGGGGCTGATGATTGGCGACACCGTGATTATCCGCCGTGCCGGTGACGTGATCCCGCAAGTGGTGCAAGTGGTCATGGAT CGTCGTCCCGAGAATGCACGCGCCGTGCAGATTCCCGAGCGTTGCCCGGTCTGCGGCTCCCACGTCGAGCGCACGCAACTGGTCAAGCGCAGCAAAGGCA AGGAAACCATCAGCGAAGGCGCGGTGTATCGCTGCGTCGGCCGACTGGCCTGTGGCGCGCAGTTGAAGCAGGCGATCATCCACTTCGTCTCGCGCCGCGC CATGGACATCGAAGGTCTCGGCGACAAGAGCGTCGAGCAACTGGTTGACGAAGGTCTGGTCAGTTCGCCGGCCGATCTGTTTGCGCTGAAATTCGACGAT ATTGTCGATCTGGAAGGCTTCGCCGAGGTCTCCAGCAACAAGCTGCTGGCCGCGATCGAAGACAGCAAGAAGCCAGGGCTGGCGCGCTTCATCTACGCCC TCGGCATTCCCGATGTCGGCGAAGAGACGGCCAAGGTGTTGGCGCGCTCGCTGGGTTCGCTGGAGCGCGTTCAGCAAGCGTTGCCGCAAGTGCTGACCTA CCTGCCGGACGTCGGGCTGGAAGTGGCTCACGAGATTCACAGCTTCTTTGAGGATGCGCACAACCAGCAGGTGATCACCGAACTGCTGGGGCACGGTCTG CAGATTCAGGATCAGGGCGAGCTGGGCGCCGAGTTTGCGGCCAGCACCACGCTGGGTGGCTTCCTCGACAAGCTGCACATTCCTTCGGTCGGCCCGGGCG GCGCGCAAAAACTGGCGGACAAGTTCGGTTCGCTGGAAGCGGTGATGGACGCCGACTGGCTGGACATGCGACAGGCGCTGCCGGAGAAGCAGGCGAATTC GGTTCGCGATTTCTTTAAGTCGAAAGACAATCAACAGCTTGCCAAAGATTCCGAAAAGCAACTGCGCGATTTCGGCATGCACTGGCAGAGCGAGAAGAAA GTCGTCGAAGGTTTGCCGCTGTCCGGCGAGACCTGGGTGCTGACCGGCAAGGTTGAGCTGATGAGCCGTGATGTGGCCAAGGAACATCTCGAAAGTCTGG GCGCGAAAGTGGCCGGCTCGGTGTCGGCGAAAACTCATTGCGTGGTCGCAGGTCCCGGTGCTGGCTCGAAACTCACCAAAGCCAATGAGCTGGGTGTGAA AGTGATGGACGAAGAAGCGTTTATCGCATTCCTCAAAACCCACGGCCTTCAGGTTTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGCAAAACCCTGTGGCGAGGGGGCTTACCCCCTCACCACAATGATTGCCTCGTGGTACTCGTGGGAACGATGTTGTCCTGGCAATGATCTAGTCTTGGCA AGCCCCAGGGAGAGATCGCCATGTACCGCTTTTTCGAGCAGCTCAGTTCTCGCATCGTCGCGCCGTTCATGGGCGAGTCTTCACGCAACAGCAAAATCTG GCCGTGCCGCTGCGGCCAGTCACTGTTCTTTCGCAACAGCCAGTGCCTGGCCTGCAATGCGGCGCTGGGCTACCAGCCTGAAGAAAGTCGCATCACGTCA TTGTCGCCCGGTGTGGAGAATGGCACCTGGACGCTGGATGCCGATCCCGATGCCGGCCTCTTTCGCCGCTGCGCCAACCTCGATACCCCCGCCGCATGCA ATTGGCTGCTTCCCGCCAATGTCGATGATGCCTTGTGCGTCGCCTGCAGCCTCAACCGCACCATTCCCGATCTGTCCGCCCCGGAAAATCCCGAGCGCTG
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MTAAKNRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQRVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTE GLDLPAGDLFGGGAAVEYSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGEGWPATLEVRGEVFMSKAGFERLNASQLEVG GKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSHDIADTHIGNLKQLQAWGMPISHELKLAKGIGECLDYYRDIGERRNALAYEIDGVVFKVNS IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVMD RRPENARAVQIPERCPVCGSHVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQLVDEGLVSSPADLFALKFDD IVDLEGFAEVSSNKLLAAIEDSKKPGLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVITELLGHGL QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEAVMDADWLDMRQALPEKQANSVRDFFKSKDNQQLAKDSEKQLRDFGMHWQSEKK VVEGLPLSGETWVLTGKVELMSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKTHGLQV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site