Pseudomonas sp. H1h, U862_RS0108355
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAGGCGTCGATCGCTTTGCGCGGCGACCAGCAGGGCGTCGATGACTTTAAGACGAATCAGGCTGGTACGCAGGCCAAAGCTTTTGAGCAGCAGGCGAA TGCGCTCATTGCCCTGTCGCTCGGGGCTGGGTGCGAAACTGCTCGCGCGGGGGCTCATGGAAGCTCCTTGTGACGCCTGGCTACCGTCCGTTGGTAGTTG CGAGTTGTACATGGGGTTACTCCTTTTCAGAGCCTGATCAGGAAACGTTTTGGCAGCTCTCACTAAACAAGACGTTTCAGCACGGCGAATCATGAAAGGA AATATGTAGAAATTTTGTCGCTTATTCGTTGTTTTCCCGTAACCACTGGATTGTCCGGTGGGCGTGCGGCCTAAATTTTTTCCCCCGGATTCGTTTCCTG ATCAGCCACCTTGCGCCCAGGCGCATGCGTCAACTTCAGACTGGGTCCGGCGCACGCGCAACGCACGCGTCGGTCCTTGTCCTATCGATCAGGAGCGTGT
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| DNA Sequence for Gene |
>U862_RS0108355
GTGATTATTTCCAGACAGTTAACCGGGCTGGCCTTTGCCGGCGCGTTCCTCGGGCTCAGTCTGTCGGCCCATGCGTTCAGTCCCGCCACTCAGGCCAGTG CTGCTCTGGCCAGCGCCGAGATTCGCCGCACCGGGTTTGGCGTGCCGCACATCCGGGCAGAAAACGAGCGGGGCCTGGGCTTCGGTATCGGTTACGCCTA CGCCCAGGACAACCTGTGCCTGCTGGCCAACGAGATCGTCACGGTCAATGGTCAGCGCTCGCGTTATTTCGGCCCGGACCAGTTCACCGTCGAGGAGCGT GAAAACCGCGTCAGCGATGTGTTCTTCGCCTGGCTCAATACCCCGCAGGCAGTCGCCGCGTTCTGGCAGGCACAACCCACGCAAGTGCGCGAGCTGGTAG AAGGCTATGCCGCAGGCTACAACCGCTACCTCGCCGAGCGTCGCCAGCAGGGTTTGCCGCAGCAGTGCCAAGGTGAATGGGTGCGCGAGATCGCCGCCGA GGACCTGGTGAAACTCACGCGTCGGCTGTTGGTCGAGGGTGGTGTCGGGCAGTTCGCCGAGGCGTTGGCCGGCGCAACACCGCCGCAGGCGTCGGCACAG ATCGACAGCAATGCACACGCCTATCAGGTCGCGGGTGCGCGCATGCAGCGCTTCGCCCTGGATCGCGGCAGCAACGCCGTGGCGGTCGGCAGCGAGCGCT CGTTCAACGGTCGCGGCATGCTGCTGGCCAATCCGCATTTTCCGTGGGTCGGCGGCATGCGTTTTTACCAGATGCACCTGACCATTCCCGGCAAACTCGA CGTCATGGGCGCAGCATTGCCGGGGTTGCCGATGATCAACATCGGCTTCAACCAGCATCTGGCCTGGACCCACACGGTCGATTCATCCAAGCACTTCACC CTGTATCGCCTGCAACTCGATCCGAAAGACCCGACTCACTACCTGCTCGACGGCAAATCGCTGCCGATGAGCAAGCAGACCGTGACCGTGCAGGTCAGAC AGGCGGACGGTCAGGTTGTGCCGGTAGCGCGCGATGTCTACAGCTCGCAGTTCGGCCCGATCGTGCAATGGCCGGGCAAGCTCGACTGGGACCATCAGTA CGCCTACAGCCTGCGCGATGCCAACCTGGGCAACGATCGCGTGCTGACCCAGTGGTACGCGATGAATCAGGCCGAAAACCTCGAGGATTTGCAGGATTCG GTGCACAAGATCCAGGGCATCCCGTGGGTCAATACCCTGGCGGTGGATGACAAGGGCCAGACGCTGTACATGAACCTGTCGGTGGTACCCAACGTCAGCG CTGACAAACTCGCCCAGTGCAGTGATCCGCGTGCGGGTTTGCAGATGATTGTGCTGGACGGTTCGCACAGCGCCTGCGCGTGGGATATCGACCCACAAGC CGCGCAGCCGGGCATCTATGCCGCCAACCAGCTGCCGCAGCTGCTGCGCAAGGATTTCGTCCAGCATTCCAATGATTCGGCGTGGCTGGCGAACCCGGCG CAACCGCTGACCGGTTTCTCGCCGCTGATCAGCCAGGACGGCCAGCCACTGGGCCTGCGTGCGCGTTTTGCTCTGGATCGTCTGAGCACGCTGGGCAAGC AAGGGCCGGTGGCGGTCAAGGATCTGCAACAGATGGTGATGGATGACAACGTGTATCTGGCGACGCAGGTGCTGCCCGATCTGTTGAAGTTCTGCGCTGC CGATCTGGCTGCCGATGCGGCCGTACTGAAGCCGGTTTGCGCGGGCCTCAAGAGTTGGGACGGCCGGGCGAATCTGGATTCGGGCATCGGGCTGGTGCAT TTCCAGAACATCATGCAGGCGTTGCTCGAGTCACCGGCTATCTGGCGGGTGCCGTTCGATCCGAAAGACCCGCAACACACGCCGCGCGGGCTGGCAATCG AACAACCGGCGGTGAGCAAGGCGCTGCGTGAAGCGATGCTCGCGTCGGCCGCTACCACTGAGAAAACGGGGCTCAAGCCTGACACCCGCTGGGACGATAT TCAGGTGGTGAGCAGCGGTGCCCGGCAAACGGCAATTCACGGCGGGCCGGGGACGCTGGGCATCTACAACGCGATCCAGAGTGTGCCGCGTGAAGACGGC AAGCTCGAAGTGGTCAGCGGCACCAGCTATCTGCAAGTGGTGACATTCGACGACAAAGGCCCGCAGGCGCAGGGGCTGCTGGCGTTTTCCCTGTCCAGTG ACCCGGCGTCGAAATACTCCCGGGACCAGACCGAAGCGTTTTCGAAGAAGCAGTGGAGCGTCATGCCCTTCACCGAGGCGCAGATCAAGGCTGACCCGCA GTATCAGGTGCAGGCCATTCGTGAGGCTGCGGTTCAGCCGGCCAAGGTGGCCGAGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGATTGATTGAGGCCTGAACGAAAAAGCCGCTGCCCCCTGAAGAGGAGCAGCGGCTTTTTTGTTGTCAGGTTTCATGCTTCAGGTTTTGGTGGCTGGCG GGGCATCGAGTTGATCACCGGGTCACCCTCGGTGTTGCGGGTCAGGTAGACCGGCAGCACCTTGGGCAGGGTGTTGACCAGTCCGCCGAGCTCTTTGATG TTGTAGACGCCGCCGACGCGGATCGCTCCAGTACTGGCGTCAGCGAGCTTCAGCGGCTTGCTCAGGTATCGATTGATCAGTGGCAGGGCTTCGTTCAGTG CCAGGTTGTCCAGCACCAGTTTGCCGCTGCGCCAGGCCAGCGCGTTGTCGTTGGGATAGGTCTGGCTGATCTGTGGCATGTAGTCGCCATGCCGGTACTG CGCCTGCATGGCCGGCCCCAGACGCAAGCCGTCGCCGGGCAGTGCTGCGTTGCTGGTTACCAGCACCGAGCCTTCGATCAGATTGACCCGCACCTGGTCT
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| Amino Acid Sequence |
>acyl-homoserine lactone acylase subunit beta
MIISRQLTGLAFAGAFLGLSLSAHAFSPATQASAALASAEIRRTGFGVPHIRAENERGLGFGIGYAYAQDNLCLLANEIVTVNGQRSRYFGPDQFTVEER ENRVSDVFFAWLNTPQAVAAFWQAQPTQVRELVEGYAAGYNRYLAERRQQGLPQQCQGEWVREIAAEDLVKLTRRLLVEGGVGQFAEALAGATPPQASAQ IDSNAHAYQVAGARMQRFALDRGSNAVAVGSERSFNGRGMLLANPHFPWVGGMRFYQMHLTIPGKLDVMGAALPGLPMINIGFNQHLAWTHTVDSSKHFT LYRLQLDPKDPTHYLLDGKSLPMSKQTVTVQVRQADGQVVPVARDVYSSQFGPIVQWPGKLDWDHQYAYSLRDANLGNDRVLTQWYAMNQAENLEDLQDS VHKIQGIPWVNTLAVDDKGQTLYMNLSVVPNVSADKLAQCSDPRAGLQMIVLDGSHSACAWDIDPQAAQPGIYAANQLPQLLRKDFVQHSNDSAWLANPA QPLTGFSPLISQDGQPLGLRARFALDRLSTLGKQGPVAVKDLQQMVMDDNVYLATQVLPDLLKFCAADLAADAAVLKPVCAGLKSWDGRANLDSGIGLVH FQNIMQALLESPAIWRVPFDPKDPQHTPRGLAIEQPAVSKALREAMLASAATTEKTGLKPDTRWDDIQVVSSGARQTAIHGGPGTLGIYNAIQSVPREDG KLEVVSGTSYLQVVTFDDKGPQAQGLLAFSLSSDPASKYSRDQTEAFSKKQWSVMPFTEAQIKADPQYQVQAIREAAVQPAKVAEQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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