Pseudomonas sp. H1h, U862_RS0107060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACCGCATTGGAGCGACAACGGCTGGGTGGTGAACATCAATCACCTGCACGCCATTCATCAAGCGGTCAGTCGTGCTCAGGGGTTGTCGGCGAGCAAA CCCGCAATCGATGCGCCACAGCGGCAACTGAAAACCCTGCATCTGCATGTGCTGGTCGCCGAAGACAACGCCATCAATCAATTGATCTTGCATGACCAGT TGCAGGAGCTGGGTTGTACCGCCGAGCTGGCGAGCAACGGTGAGGAAGCCTTGGCGCTGTGGCGCAAGGGGCATTTCGACGTGATCCTGAGCGACGTCAA CATGCCGCAGAAGAACGGCTATGAACTGGCCCGCGAACTGCGCCGCCTCGGTTGCACGGTGCCGATCATCGGCGCGACCGCCAATGCCATGCGCGGCGAA GAAGCGCTGTGCCTGGCCGCCGGAATGAACGACTGTCTGGTCAAACCTTTCACGCTACAGGCCCTGCATCAGCAGTTGGCGCCCTACGAAAGAACACTCC
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| DNA Sequence for Gene |
>U862_RS0107060
ATGAAACCGATTAGTATCCTGGTCGTTGAAGACCATCCGTTCCAGCAGCTGTACTTGCAGAATCTATTCAGCCAGATCGGCCAGTTTCATCTGCAATTTG CCGAAGAAGGCAGCGCCGCGCTGGACTGCCTGAAACGTCACGACTTCGATCTGGTGCTGACCGATTTGTTGATGCCCGGCATGGACGGCGTGCAGTTCAT CCAGGGTCTTGCCGCCTCGGGTTCGCGCCCGGCGCTGGCGATCATGAGCGCCGCCTCGCGCCGCATGCTGACCAGTGCCAGCCTCGCCGCGCGCAATCTG GGCGTGAAAGTCATCGGCCTGATTTCCAAACCGGTCAAGACCGCAGCCTTGCGCAATCTCACTGATCAATTGGGCAATTTGCGTCAGGCTACCCTGCCCC TGCCCCTGCCCGGCCCGCAGATTGATCATCTGGCCATTCTCGATGCGCTGGACAACGGTGAATTACAGGCCTGGTTCCAACCAAAGAAATCACTGGCCAA CGGCCGCATCGTCGCCGCCGAAGCGTTGGTGCGCTGGCTTCACCCTGAACAGGGAGTCTTGTTGCCGGGCATGTTTCTGCCCGCGTTCAAGGCCTTCAAT CTGGAAGAGCGTTTGCTCTGGCTGATTCTGGAGCAAGCGATCAAGGCCCAGGAGCAATGGCACGCTCAGGGCTATGCGATTCCGGTGTCGATCAATCTGC CGACGCATCTGCTCAACAGCCTCGACCTTGCCGACCGGATTCTCGCCTTTGTCCTTGAGCGCCACGGTGTGCCGGCAATGATCTGTTTCGAGTTGATGGA GTGTTCGATGCCCGACGACATCAGCAACTTCTACGCCGGTGCGTGCCGGTTGCGCATGAAGGGCTTCGGCCTGTCGCAGGATGATTTCGGGCAGGGTTAC AGCTCTTACATGAACCTGGTCTCGACGCCCTTTACCGAGTTGAAAATTGACCGGGCGCTGGTGCAGGGCTGCAACGACAACGAAGAATTGGCGCAAGCAC TGACAAGTATTGTCGCCCTCGGCCGACAACTGGGTTTGACCGTGGTGGCCGAGGGCGTCGAGACGGCGCAAGAACTGGCGGTGTTGCGTAAAATCAACTG CACTCAGGTTCAGGGTTTCATCATTTCCCACGCCGTATCGTCACAGGATTTTCAGCAGTTGCTGACGCAGGACGGCCCCGCGTTGACGGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGTCGTTCATTGTTCAGAGGCAGCGTTGTTCAACGCTTATCCAGGCACTTTCAGCAGGCTTGCTCAATGACTCATCCAAGCGCTCCGATGGAGAAACT GACCAACAGTTCATTGCGCATGAACGCCGGGCTGGTGGTGCTATGCGGCCTCGCCTCGCTGTTGGTGGGCCTCAGTATCTGGGGTCTGTATCGCATGGTC GAAGAGCAGCGCGACACGGTGCAGTTTCATTTCGCCCGGCTGATGGAGAACATCGGCGAACAGGACGTGTTCCTCAGCGCCATTGTTCAGCAAGCCGACA AAGGCCTGCCGTTGAATACACACGTGCAGATCTTCAAGCAGACGCCATTGCCCGATGAGGGAGTCGGGATCTATAAGGCGCAGGAGCTCTCCTCATCCCT GCCGTACAGCGTGAAAATCAATCCGGCGGCGATTGAAACCAGTGAACGTGCGCGAGTCTTCGCCCTCGGCGCCCACCTGGCCAGTTACTACAGTGCTTTC
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MKPISILVVEDHPFQQLYLQNLFSQIGQFHLQFAEEGSAALDCLKRHDFDLVLTDLLMPGMDGVQFIQGLAASGSRPALAIMSAASRRMLTSASLAARNL GVKVIGLISKPVKTAALRNLTDQLGNLRQATLPLPLPGPQIDHLAILDALDNGELQAWFQPKKSLANGRIVAAEALVRWLHPEQGVLLPGMFLPAFKAFN LEERLLWLILEQAIKAQEQWHAQGYAIPVSINLPTHLLNSLDLADRILAFVLERHGVPAMICFELMECSMPDDISNFYAGACRLRMKGFGLSQDDFGQGY SSYMNLVSTPFTELKIDRALVQGCNDNEELAQALTSIVALGRQLGLTVVAEGVETAQELAVLRKINCTQVQGFIISHAVSSQDFQQLLTQDGPALTD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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