Pseudomonas sp. H1h, U862_RS0102920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCGGCACCGCGCCGTTCACTGCGCTGCAAAGCCGTCAGGTGAAACTCTGGGTGTTGGCCGAAGATGCGCAGGCGCGTGCCGTGCAGGTGCCGGACTGG GCCAAAGCCATCGATTACCCGGGCTTTGTCGAGCTGTCGATTCACCACGACAAGGTCAACAGCTGGCTATGAATTCTTTGACCGTCGGCGCCCGCGCCAT CGAACTGGACAAGGACGGCTTTCTGGTCGACCTCAGCGACTGGTCCCGTGATGTCGCCGGCGCCCTCGCCGCCGCCGAAGGCATCGAACTGACCGCCGAA CACTGGGAAGTCCTCGAACTGCTGCGCAACTTCTACGCGCAATTCCAGTTGTCGCCGGCCACGCGTCCACTGATCAAGTACACCGCACTGAAACTCGGCC CGGACAAAGGCAACAGCCTGCACCTGAACCGACTGTTCAAAGGCACCCCTGCCAAACTCGCCGCGAAACTGGCGGGCCTGCCCAAACCGACGAATTGCTT
|
|
| DNA Sequence for Gene |
>U862_RS0102920
ATGACCGACTTTCCAGCGCTGACCCTCGAAACGCCCGCCGAACACCCGTTCGCTCAATTCGTGCGGATCCTCGGCAAGGGCAAGCGCGGCGCCCGCGACC TGACCCGTGAGGAAGCCCGGGAAGCCATGGGCATGGTGCTCGACGACAAGGTCGAAGACACCCAGCTCGGGGCCTTCCTGATGTTGCTACGGCACAAGGA AGAAAGCGCCGAGGAGATGGCCGGTTTCACCGAAGCCTTGCGCGAGCGCTTGCAGGCGCCGGCGTTGAACGTCGATCTGGACTGGCCGACCTACGCCGGC AAGAAACGTCATCTGCCGTGGTATCTGCTGGCGGCCAAATGTCTGGCGCAAAACGGCGTGCGCATTTTCATGCATGGCGGCGGCGCACACACTGCCGGGC GCCTGTACACCGAACAACTGCTCGGCGAGCTGAACATCCCGCTGTGCCGCACCTGGCAGCAAGTCGGCAGTGCGCTGGACAATGGCGGCCTGGCGTTCAT GCCGCTGATGGACTGGGCGCCGCCGTTGCAGAAGATGATCGACCTGCGCAACACCATGGGCCTGCGCTCGCCAATCCATTCGCTGGCACGGATTCTCAAT CCGCTGCGCGCGCGGTGTGGCCTGCAAAGTATTTTCCACCCGGGCTATCAAGCGGTGCATCGCGATGCCAGCGGCCTGCTCGGTGACACAGCGATCGTGG TCAAGGGCGATGGCGGCGAAATCGAGATCAACCCGGATGCCGACAGCCACCTGTACGGCACCACTGGCGGCGAGAGCTGGGACGAGGAATGGCCGCAACT GTCGAGCCAGCGCCACGTCAAGCCAGGCACGCTGGACGTGGAACACCTCAAGGCCGTGTGGCGCGGCGAGGCGCTCGACAGCTATCCGCAAATGGCCCTG ATCTCGACCATGGCCCTGGCCCTGCGCGGCCTTGGTCAAAGCCGCGAGCAAGCGTTCGAAACGGCCGAACAGTACTGGGCAGCACGCAACAAATCGATTT AA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGATCATTGACGCCCGATCTTTGCGCTTTTTGTTCGAACTCATCGGAATAGACTCGGCTCCAACGCTTATTGGGTTGTGGAGTCTTGATCATGGGTTTA CTCGTCGATGGCCACTGGCAGGACAAGTGGTACGAAAGCAGCAAGGACGGCGCGTTCCAGCGCGAACAGGCACAACGCCGCCACTGGGTCACCGCTGACG GCCAGCCCGGGCCGAGCGGTGAAGGTGGTTTTGCCGCCGAAGCCGGTCGTTATCATCTCTATGTCTCCCTCGCCTGCCCCTGGGCGCACCGCACGCTGAT TTTGCGCAAACTCAAAGGCCTGGAAAACCTGATCGACGTGTCCGTGGTCAGTTGGCTGATGCTGGAAAACGGCTGGACCTTCGACAAGGCCCACGGCTCG ACCGGCGACAAGCTCGATCACTTCGATTTCATGCACCAGCGCTACACCGCCGACACACCGGACTACACCGGCCGCGTCACCGTTCCGGTGCTGTGGGACA
|
|
| Amino Acid Sequence |
>hypothetical protein
MTDFPALTLETPAEHPFAQFVRILGKGKRGARDLTREEAREAMGMVLDDKVEDTQLGAFLMLLRHKEESAEEMAGFTEALRERLQAPALNVDLDWPTYAG KKRHLPWYLLAAKCLAQNGVRIFMHGGGAHTAGRLYTEQLLGELNIPLCRTWQQVGSALDNGGLAFMPLMDWAPPLQKMIDLRNTMGLRSPIHSLARILN PLRARCGLQSIFHPGYQAVHRDASGLLGDTAIVVKGDGGEIEINPDADSHLYGTTGGESWDEEWPQLSSQRHVKPGTLDVEHLKAVWRGEALDSYPQMAL ISTMALALRGLGQSREQAFETAEQYWAARNKSI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|