Pseudomonas sp. H1h, U862_RS0101815
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACTTGATGCAGGAAGTCGATCGCACTGTTGATCACATGAAAGACGAAGCAGCCAACTTCCCTGACCCGGCCGACCGTGCCAGCCAGGAAGAAGAATTCG CCCTCGAGCTGCGCGCCCGCGACCGCGAGCGCAAGTTGATCAAGAAGATCGACAAGACCCTCGAACTGATTCAGGACGAAGAATACGGCTGGTGCGAGTC CTGCGGCATCGAGATCGGCGTCAAGCGCCTCGAAGCCCGTCCTACCGCGGATCTGTGCATCGACTGCAAGACCCTGGCGGAAATCAAGGAAAAGCAGGTC GGCAAGTAATCTCGACTTGAACGAAAAACGGAGCGTGCGAACGCTCCGTTTTTGTTTCTGCCTTTTGCCTTTGTGGGAGGGGGCTTGCTCCCGAATACAA TGTGTCATTCAACATAAACGTGTCTGATCCGACGCATTCGCGAGCAAGCCCGCTCCCACAGGGGGTAATGTGCGCGAACCCTGAAAATTATATTGTCCTC
|
|
| DNA Sequence for Gene |
>U862_RS0101815
ATGACTGCCAAAACCTCCCCCGCCTACATTGGCCGCTTCGCCCCGACACCCAGTGGCCATCTGCACTTCGGCTCGCTGGTCGCCGCCCTCGCCTCTTACC TCGACGCACGCGCAGTGGGCGGGCGCTGGCTGGTGCGCATGGAAGATCTTGATCCGCCCCGGGAGGAGCCCGGCGCGCAGGCAGCGATTCTCAAGGCGCT GGAAAGCTACGGTTTCGAATGGGACGGCGAAATGGTGCGCCAGAGTGACCGGCACGAGGCCTACGCGCAAATCCTCAACAGCCTGTTCAACCATGGCCTT GCCTACGCCTGCACCTGTTCGCGCAAACAACTGGAGCCGTATCACGGCATTTATCCGGGGCTGTGCCGCAATGCCGGGCATGAGCAGCAAGACGCGGCGA TCCGCCTGCGCGTGCCGGAACTGGAATATCACTTCATCGACCGGGTGCAGGGCGAGTTTCGCCAGCATCTGGGGCGCGAAGTCGGCGATTTCGTGATTCG CCGCCGCGATGGCTTGTACGCCTATCAACTGGCAGTCGTGCTGGATGACGCCTGGCAAGGCATCACCGACATCGTGCGCGGCGCCGATCTGCTCGACTCC ACCCCGCGCCAGCTCTACCTTCAAGAACTGCTGGGTTTTCGTCAGCCACGCTACCTGCACCTGCCATTGATCACGCAACCGGACGGCAACAAGCTCGGCA AATCCTACCGCTCGCCGCCACTGGAGGCCGATCAAGCCACCCCTTTGCTGCTGCGGGCCCTGCGCGCGCTGGGGCAGAACCCCGGCGCCGAGTTGGCTCA CGCCACCCCGCAGGAGCTACTGAACTGGGGCGCAAACCACTGGGATGCGACCCGGATCCCGCGCACACTGACCCTGCCCGAAGCGCAACTGCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGCACTTGCAGTGGCGCGCCCATCCGTTACCATCGCCGCACGTTTTCGGGCACGCGCATAAAAAAGAGAGGCCGGGATGTACATCTATCGCTTGGTCCT GCTTCTGGTCGTGGGAATCTATCTGTTTTCTCCAGCCATCATGGATTGGTGGATCGACGCCACGGGCGCCTGGTATCGGCCGTATCTGCTCTGGTTGATC CTGATTGTCGTGACCTTCATCCTGCAGAGCCAAAAAGATGCCGATGAGCTTTAGCCTGACCCAGATGATCCTGATCAGCGCCGCATACCTGGCGGTGCTG TTCGGAGTTGCCTGGATCAGTGAACGGGGCATGATCCCGCGGGCGATCATTCGCCACCCGCTGACCTACACCCTGTCGCTGGGGGTTTACGCCAGTGCGT GGGCGTTTTATGGCACGGTCGGCCTGGCCTATCAGTACGGCTACGGCTTTCTGTCGAGCTATCTCGGGGTGTCCGGCGCGTTTCTGCTGGCGCCGGTGTT
|
|
| Amino Acid Sequence |
>glutamyl-Q tRNA(Asp) ligase
MTAKTSPAYIGRFAPTPSGHLHFGSLVAALASYLDARAVGGRWLVRMEDLDPPREEPGAQAAILKALESYGFEWDGEMVRQSDRHEAYAQILNSLFNHGL AYACTCSRKQLEPYHGIYPGLCRNAGHEQQDAAIRLRVPELEYHFIDRVQGEFRQHLGREVGDFVIRRRDGLYAYQLAVVLDDAWQGITDIVRGADLLDS TPRQLYLQELLGFRQPRYLHLPLITQPDGNKLGKSYRSPPLEADQATPLLLRALRALGQNPGAELAHATPQELLNWGANHWDATRIPRTLTLPEAQLQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|