Pseudomonas sp. H1h, U862_RS0100830
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. H1h Contig2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGTCAGGCCGATGCCCTGCTCGAAAGCGGTCAGCGAGTCTTCCAGCGACAATTCTCCGTTCTCCAGACGCTCGACCAGTGTTTGCAGGTCGGCGAGGGA CTGTTCGAAATCCAGTGCAGCTTTTTTGCGGGCCATGGCGGCGATTTCCGGTTGACGTTAAACCGGCGCGACACTAGCAGATAGGGGGTTTATGGGCAAA TGAGCGGCGGTTTCACGGCCATCGCGGGCGGATGGGAAACGGGTTTTGGACGTGGTGAAAGTTATTCGGCTCATTTTGTGAGCCGAATAAGTCCGCTATT CGGCTCACGCCTCGTAAATGTGCGTGATTCCCACCGCATTTCAAGATGTATCCGATTGTTAAAAAACTGCCGAATCGCTAATCTTCGCGCCTTCTACGAC CCGGTAGTCACGGGTCTTTCAGACGAAACGCAGTTTTCACCGCTGTGAAGTACCGAGGATCGGGTGCAAGGTTTCGTCCAGGCATGGCAGGAGGCATTAC
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| DNA Sequence for Gene |
>U862_RS0100830
ATGCGTTCATTTCTTTTGCTGCTGATCGGCCTGGCTTGCGCGCCTGCGCTCTCGGCGGCGCCGAGCGCTGAACTGTCGGAACCGGCGGGCGGCTGGCGTT ACCACGGCCTGCTTGATCGCAGTGAAAACCCGCAGGTCGCTTACCCCACGCCGCCGATCGATCGCGGTATCCAGCGCAATCGCACGATGATCCAGGGCCA GCTCAAGGCCATCGGCAATCAGCGCGGGCCGCACACGCTGGCGGTCAACGGCAATCCATTGAATCTGTACACCGACGATGACGGGCGTTTCGCCCGGCCG TATGCGTTCGGCGCCGGCTCCAACAGTGTCGAGGTGCGCAGCGCCGCGGGCCAGTCGCTCAAGCGCGTGCAGTTTTACGAAGCGAATAACCTGCGCACGC CGGCGAAGATCCGTGTGGTGCTCGGCTGGGACGACCCCAAGGCCGAGCTCGACCTGCACATCATTACCCCCGACGGCCAACACGCGTTCTTCGCCCACAC GGCGCTGACCAACGGCGGCGGTCTGGACCCGGATGGCGTCGATGGCCCCGGCCCGGAAATGTTCACCATGACCGCTCCGCTGCATGGCACCTATCTGGTT TACGTCAACTATTGGGGCAACTTCGGTGACGGCGGCTATAACTTCGAGGAGGCCAGCAATCAGAACGAGGTCATCACCTCGCAAATCACGCTGGTGCTCA ACGAAAACACGGTCGACGAAAAACGCGAGACCTTCATCGTGCCCCTGCGGGCGATCGGTGATCTGCTGCTGGTCAAGACTTTCAACTATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATCCCGCACCACGGATGAACTTCGGGTTTTGTGAACATGAGTGATAACGCTGCTTCTCCGGCCGTCCCGACACCTGCCGGCCAACCTTCCCGGCGCTG GCCGGCGCTGCTGATCGGCCTGGTCCTGGTGGCCGGGGTAGCCGGTGGTCTGGGCTGGCTGCTGCACAAACCCAAGCTGCCGGCGGCGGCACTTGCCAGC GACAAGCTCGGCCTGAGCCGTCCGGACGCGCTGCTGGAAACCCGCTCCCTGAGCCAGTTGCCCAAAGACCTGCTGACGGTGCCGTTGCTCAAGGCCACGC TCACCGAAGATTTCGTCTTCTATTACGAAACCCACGCCGACCGCCTGGGGCTGATCGGCAGCCTGCGGCGGATCATCTACGAGCATGACCTGAAGCTGCA GGACAGCCTGATCGAGCAGCTTTTCGATCAGCCGGCCGATGTCGCGCTGTGGCGCGGTGCCGATGGCCGGCTCAAGGATTTCCTGCTGGTGATGGATCGC
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| Amino Acid Sequence |
>signal peptide protein
MRSFLLLLIGLACAPALSAAPSAELSEPAGGWRYHGLLDRSENPQVAYPTPPIDRGIQRNRTMIQGQLKAIGNQRGPHTLAVNGNPLNLYTDDDGRFARP YAFGAGSNSVEVRSAAGQSLKRVQFYEANNLRTPAKIRVVLGWDDPKAELDLHIITPDGQHAFFAHTALTNGGGLDPDGVDGPGPEMFTMTAPLHGTYLV YVNYWGNFGDGGYNFEEASNQNEVITSQITLVLNENTVDEKRETFIVPLRAIGDLLLVKTFNY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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