Pseudomonas sp. H1h, U862_RS0100345

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. H1h Contig1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCTGAAGGAGCACTTGGGCTACAAGCTGCAAAATGTGTTTCTGGATGTCGCGGACATGGCGCCGCTGCTGTGCCCGCAGGCGAATATCCGCGAGGCCGG GCTGGATGAGTGGATCGACTGGTTCAAGCTTGAAGTGTTCGAGCGCCACAACGCGAGTGCCGACGCGTTGGCCACCGCAGAGCTGGCGTTGATTCTGTTC AGCCGGGCGCGGCAGCAGCAGATCCATAGCCCGTTGAATCTGCAGCAGCGTTTGAGTCAGTGGAAACGTCGACAGCAGGCGCCGTCCTTCTAGTTCATCA ATGCCTGTACTGGCCTCTTCGCGAGCAAGCCCGCTCCCACACTGGAATGCATTCCCTCTGTGGGAGCGGGCTTGCTCGCGAAGAACGATGATGCGGTTTT ACTGATACCACCCGACCAGTGGCCAATTGCTAACCATTCCCACCTCTGCGAGAATCGCGAACAATTCTCGTTGGTTAACATTTCCCAATCGGTGCGTCTG
DNA Sequence for Gene
>U862_RS0100345
GTGTCGTCAGTCCCAAGCCCTCACAGTGAACTCGTCGGTGCGTTGTATCGCGACCATCGCGGTTGGCTGCTGAGCTGGTTGCGGCGCAACGTGGCTTGCC CGCAGCGAGCCGAAGACCTCAGCCAGGACACCTTCGTGCGTCTGCTCGGCCGCGATGAACTGCTGACGCCACGCGAACCCCGGGCGTTTCTGGTGGCGAT CGCCAAAGGTCTGTTATTCGACTACTTCCGCCGCGCTGCGCTGGAGCAGGCCTACCTCGCCGAATTGACGCTGATCCCCGAAGGCGAACAACCTTCGGTG GAAGAACAGCAACTGATCCTCGAAGACCTCAAGGCTATCGACCGTCTGCTCGGCAAACTCTCGACCAAGGCCCGCGCCGCTTTCCTTTATAACCGCCTCG ACGGCCTCGGCCATGCCGAGATCGCCGAGAAGCTCGGCGTCTCGGTGCCGCGTGTGCGGCAATACCTCGCTCAGGGGATTCGTCAGTGCTACATCGCCCT GTACGGGGAGCCGACATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCGGCCAGCTCCAAACCGGTCTCGGCCCAGGTGCTGGATGCGGCGATCGCCTGGCAGTTATCGCTGGACTCCAGCAGTCCCCTGGAGCGTGAAGAGTT CGCCAAGTGGCATGCAGCCCATGAAGAGCACGCTCGGGCCTGGCGCCAGTTGGGCATGCTCGATCAGCGTTTCAGCGTGGCCAACGGTCCGGCTCGCAGC GCGTTGTTGCAATCACGCGAAGGCATTCGCCGCCGGGTGCGCAAGCTGGGCAGTGGTCTGGCGAGCATTGTCGCGGTGGTCGGTCTGGCACTGCTGGTCG GTGATCGTTACCTGCCGCTGGATTACTGGCTCGCCGATCAACGCACGGCAACCGGCGAGCAGCGCACGGTGCGTCTGGCCGACGGCACCCTGCTCAACCT CAACACCCACAGTGCGGTGGATGTGCGCTTCGATGCCAGGCAACGGCTGATCATCCTGCAGGAAGGCGAGATTCTGGTGGAGACCGGCCATGGCGATGCG
Amino Acid Sequence
>RNA polymerase sigma factor
MSSVPSPHSELVGALYRDHRGWLLSWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREPRAFLVAIAKGLLFDYFRRAALEQAYLAELTLIPEGEQPSV EEQQLILEDLKAIDRLLGKLSTKARAAFLYNRLDGLGHAEIAEKLGVSVPRVRQYLAQGIRQCYIALYGEPT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site