Pseudomonas aeruginosa BWHPSA045, Q050_05398

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00732
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.3500.10 - IPR023323 Tex-like domain superfamily 115 502 0.0
Pfam PF12836 Helix-hairpin-helix motif - - 495 559 4.4E-29
CDD cd05685 S1_Tex IPR044146 Tex, S1 domain 655 722 2.57127E-37
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 642 729 1.64E-25
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 653 724 1.6E-24
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 325 473 4.32E-53
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 653 724 5.0E-20
PANTHER PTHR10724 30S RIBOSOMAL PROTEIN S1 - - 43 739 0.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 474 560 4.45E-28
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 564 636 1.78E-20
FunFam G3DSA:1.10.10.650:FF:000001 S1 RNA-binding domain 1 - - 1 114 1.2E-40
Pfam PF17674 HHH domain IPR041692 HHH domain 9 565 634 8.8E-26
FunFam G3DSA:1.10.150.310:FF:000001 RNA-binding transcriptional accessory protein - - 503 634 8.0E-49
Pfam PF09371 Tex-like protein N-terminal domain IPR018974 Tex-like protein, N-terminal 19 197 3.6E-67
FunFam G3DSA:3.30.420.140:FF:000001 RNA-binding transcriptional accessory protein - - 328 455 8.2E-55
MobiDBLite mobidb-lite consensus disorder prediction - - 720 764 -
FunFam G3DSA:2.40.50.140:FF:000051 RNA-binding transcriptional accessory protein - - 638 728 1.2E-39
SMART SM00732 rnase_8s IPR006641 YqgF/RNase H-like domain 329 428 4.2E-41
Gene3D G3DSA:3.30.420.140 - IPR037027 YqgF/RNase H-like domain superfamily 328 455 0.0
Pfam PF16921 Tex protein YqgF-like domain IPR032639 Tex protein, YqgF-like domain 330 455 4.9E-53
Gene3D G3DSA:1.10.10.650 - IPR023319 Tex-like protein, HTH domain superfamily 1 114 4.7E-43
SUPERFAMILY SSF158832 Tex N-terminal region-like - - 4 324 1.31E-116
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 635 730 2.8E-31
Gene3D G3DSA:1.10.150.310 - - - 503 634 8.6E-54

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.