Pseudomonas putida HB3267, B479_26854
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida HB3267
GCF_000325725.1|latest |
| Locus Tag |
B479_26854
|
| Name |
|
| Replicon | plasmid pPC9 |
| Genomic location | 7865 - 9139 (+ strand) |
Cross-References
| RefSeq | YP_007232163.1 |
| GI | 431805261 |
| Entrez | 14281629 |
| NCBI Locus Tag | B479_26854 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
tetracycline efflux protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 11.55 |
| Kyte-Doolittle Hydrophobicity Value | 0.594 |
| Molecular Weight (kDa) | 45198.7 |
| Isoelectric Point (pI) | 10.18 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| tet(A) | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. [PMID:8821947, PMID:15837373] | ARO:3000165 | protein homolog model | Strict | 795.8 | 99.04 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 467 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001091 (306 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: B479_26854
Search term: tetracycline efflux protein
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
novel protein
E-value:
7.1e-23
Percent Identity:
25.1
|
|
Ensembl
110, assembly
GRCh38.p14
|
major facilitator superfamily domain containing 14A [Source:HGNC Symbol;Acc:HGNC:23363]
E-value:
7.1e-23
Percent Identity:
25.1
|
References
No references are associated with this feature.