Pseudomonas aeruginosa BWH030, AJ70_02590
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH030 adTwj-supercont1.6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTGCACCAACCAGAACCTGCCCCAACGGCTGCGCCTGGGCGATATCTGCGTCGCCTGCGAAGGCACGCCGGAGTTCCTCGGTTTCCGCAATATCACCC CGGCGACGCCGAGCTACGCGCCGCCGCTGAACCGCGATTTCCTCTGGAAACTGATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCCAACGTCGACGC GCTCAAGGTGATCCTCGAAACCTACGACCTGCCGCGCTACTACGACCAGCATGCGGCGAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGGCGGTCCGC CACGAGCATGTCGACCGCCTGCATCGGGGCCTGCCGCTGCGCGGCTTGCGTACCGAGCTGACGATCGATCCGGAAGGCTACATCGGCGAGGGCGACCTGT TCGTGTTCGCTTCGGTTCTGAACGAATTTTTCGCGCTTTACGCCAGCATCAACTCCTACCACGAGTTGCGGGTGAGGAGCACACAGGGAGACGTGTACCA
|
|
| DNA Sequence for Gene |
>AJ70_02590
ATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAAGCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGCGGTCCTGCTGGTCATGGATC GCCTGCGCGAGGAATATCCCGGCCTGGGAGACGAGGCGCTCTACGATCAGTTGGAATTCCAGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGA TCGGGTGGAGTTCTTCGAAGAGCGCGGCATGCTGCGGGCGCGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTAC AGCGAGCAGGCTCTGGGCGACAGCGAGGAGGGCAATCCTACGCGGAACTTCCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTGTTGCCGATCTGGC GCAAGTACCGTTACCGGGTGAGCTTCCAGAGCGGTGCGAGCGATGCGTTCTCCGCTCAGTTGTTCGCCCTCGTCGGATTGGGCGGGGAAGAGATCCGCAA AGCCAGGGAACTGAACTGGAAACGCCTGCTGCCCTACCTGGGCCTGCTCAGCCTGCGGGCGCACTCGGCGGCCTTGATCGAGTCGGTGCTGCGCTACTAC TTCAAGCATGCCGAACTGGTCGCCGAGCAGTGTATCGAACGGCGCGTCGCGATCCTCGAAGAGCAGCGCAACCGACTCGGCCTGTTCAACAGCCAGCTTG GCGAAGACGCGGTGCTGGGCGAACGGGTCCGCGACCGCAGCGGCAAGTTCCGCATTCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAGTTCCTGCC GATCGGTCCCGGCTACCAGCCGCTTTGCGCGCTGGTCCGCTTCACCCTGCGCGACCCGCTCGACTACGACATCCGGCTGGTCTTGCGCCACGAGGAAATC CGCGAGTTCCGCATCGGCGCGCAGAACGCCTGCCGCCTTGGCTGGACCAGTTGGCTGGGCCGGGAGCGCGCCGATGGCGTGGTGACGCTGGGCAGCAAGA TTCATTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGATGGATGAGCATGATCAACGTAGACCTGCAACAACTGATTCAGGCGCTGGATGCCGACACCCGGCGCGACCTCGAAGGCTCGGCCGAGCGCTGCGTAG CCCGTGGCGGCAACAAGGTACTGGTGGAGGACCTGTTGCTGGGCCTGCTGGAGCGTCCCCAGGGACTGCTGGCGCGCGCCCTGCAGGATGCCGCGGTGGA CGCCGGCGAACTCAACGCCGCGTTGCAAGCGCGGGGCGAGCACAGCGCCTCGCGCAATCCGGTGTTCGCGCCCGAGCTGGTGCAGTGGCTGCAGGATGCG CTGTTGCTGGCCAACCTCGAACTGGGCCGTAGCCAGATCGACCAGGCGGCATTGATCCTGGCCCTGCTACGCAACCCGTTGCGCTATGCCGGCAGCCGCT ACCAGCCGCTGCTGGCGCGGCTCGACATCGAGCGGTTGAAGGATTTCGCGCTCTCGCAGCCGCTGGAGGGCGCGCCCAGCGGCAAGCCGGGCGGCGGCGA
|
|
| Amino Acid Sequence |
>type VI secretion protein
METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLREEYPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGMLRARLRFNLIGLFGASSPLPAFY SEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQSGASDAFSAQLFALVGLGGEEIRKARELNWKRLLPYLGLLSLRAHSAALIESVLRYY FKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLGERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLDYDIRLVLRHEEI REFRIGAQNACRLGWTSWLGRERADGVVTLGSKIH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|