Pseudomonas aeruginosa 3580, AJ67_05503
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3580 adTxz-supercont1.23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAACTGTTCAACGTGGATGCCAGCGGCAGGGTCAGCGCCGCTGCGAGTGCGTCGGTTGGCGGCCTGGTCGGCAGCAACGCCGGTTCGATCCTGTCGGC GCGCAGCAGCAGTACCGTCAGCGGCGGCGGGCGCAGCCGCATCGGCGGCCTGGTCGGCGAGAACCAGATCCAGGGACGCATCGTTTCGTCCATGTCGGAA GGCACCGTCAGTGGCGACTACTACGTCTCCATGGGCGGGCTGGCCGGCGTCAACCTGGGATCGATCAAGTACTCCGGCGTTAGCGGCAAGATCGACTTCA AGCCTCAGTCCCATTACGGCCAGATCTACGGTGCGCAGGTCGGCGAGAACCGTGGGGTCCTGGGCGGCAACTACGTGATCGGCGAGGCGGCGCTCCTGCC GCCTGCCGGTATCGACTACGGCAACATCTGGTAAGGCCGGCAGGGGCCGCTTTCGCCTGGAGTGCGGCCCTCTTCCGCAGGCGCAATCTTGGAGAGTTCC
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| DNA Sequence for Gene |
>AJ67_05503
ATGAGCATGAGGTTATTTCCTGGCCGCGTTTCCCTGCGCCGCCGGCCTGGCGCGCAGGCTCGGCAGGCGCTCGTTCTCGGTCTCTGCTGCCTGACCGGCG GCCAGGCCTGGGCCCTGAACGACATCGCCCTGAACTGCTCGTTCGGCAATGGCCAGGGCATGCCCTGGCGTGTGGTGAACGAGCTGACCAGCGGCACGGC GAAAGGCACGGTGCTGTTCGCCAGGCCGGTGAGCCTGTTCCTGAGCTACAAGCCCCAGGCTTCCCAGGAGGCGCATGAGCTGGTCCTCGGGGGGAACTGG TCCGGGGTGGGCTATCCGGGGCCCTACGGCACGGTGGCGTCCGACGTCAAAGGCATCGGCTATCGGATCTCGGTGGATGCCCAGGACGGCGTCAAGCGGG TGATTCCGGTCGACAACCAGCCCCATGCGCTGGACAAGCGAGTCACGAGCTTTTCCGGAAGCACGACCAGCGACTACCTACAGGAACTGGTCCTGACGGT CGACCCCGGCGAGTTGCCTGCCGGCGACCTGAAGGTAACCAGCGTATCCGGCAGCGCCACCCTGAATCTCTGGGCGGTGGACAGGCTGAAGGGCGAAGCG TCCATCGGCAGCGTCCTGGCGGTGCCTGCGGACAACTACCCCACCGGGGTTTGCCGAAAGCCCTATTCGCTGATCGGCCCGGCCTCCATCGGGATCGGCG GCGGTCCCCCGCCGCCGCCGATCCCGAAGAAATGCAAGGTCGAGGTGGGACGGGAAATCAACGTCAAACTGGGTAGCGTCGCGTTGAAGAACTTCCCGCG GGTCAACGACACCTCCACGGAGCGCTCCTTCGATATCTCTCTCAGCGAGTGTGCGGCGCTGGCCAAGCCGGAAATCGCTTTCCGCGACAAGTATGTCTCG GCGCAGCAAGCGGACCCGACGATCCTCAGCTTGAAGAGCGGCGGCGCGGCGGGGTTCGGCATCGTCGTGAAGAACGGCCTGGACCAGCAGCGGATACGTT TCGACGGCACGCCCTACCCGATGCGGCGTGTCGGCGACAGCGCCGACCTTCCGCTGAGTGCCGCCTACATCCGTATCGGCGCGGAGGGCGAATTGAAGGC CGGGGTCGCCGACGGCGCCGCCGAGTTCACGTTTACCTTCCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCGCCGCCGCTCTTTCCCCGGCGTTTCCCGCCCCGCCTCGGGAAGCGCCGTCGGCCGCTTTCGCGCCAGCCCTCGCGAAGGCTCGGCCCCTCACCTC CAGTGGTTGCAGATCGCCGAAGGCGCTCTGCATATCGCTCCGCTGCTCGTCCTGGGTCTCGTGCGCACATGCCATTCCCGCACACGGAATACCGATATTG CGTATGGGCGAAGGCTTTCTGAGGGATATGCAAGTTTCCTCGGTAGGATTTCGCGCAAATAAACGAACGCTATTTTCCAGGCGATAGTTTCAGCTTGTCG CGGAACTCTTTTTTCAAACTTTTTGCTGCTCTGGCTTGTCCGTTTCGTATTTCATCGTTTTTCATAAGTGTCTACGTAGACGTTTTTCGGGGGCTGTTTC AAGTGTCTTTGTTGTTAGTTTACGAGGCGAAAAAATAGTAGTTTTACTATATTAAATATCGTCGGTTTCACTAGAAAATACACATGTTCACTTTGAACCG
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| Amino Acid Sequence |
>fimbrial subunit CupB6
MSMRLFPGRVSLRRRPGAQARQALVLGLCCLTGGQAWALNDIALNCSFGNGQGMPWRVVNELTSGTAKGTVLFARPVSLFLSYKPQASQEAHELVLGGNW SGVGYPGPYGTVASDVKGIGYRISVDAQDGVKRVIPVDNQPHALDKRVTSFSGSTTSDYLQELVLTVDPGELPAGDLKVTSVSGSATLNLWAVDRLKGEA SIGSVLAVPADNYPTGVCRKPYSLIGPASIGIGGGPPPPPIPKKCKVEVGREINVKLGSVALKNFPRVNDTSTERSFDISLSECAALAKPEIAFRDKYVS AQQADPTILSLKSGGAAGFGIVVKNGLDQQRIRFDGTPYPMRRVGDSADLPLSAAYIRIGAEGELKAGVADGAAEFTFTFP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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