Pseudomonas aeruginosa 3580, AJ67_03475
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3580 adTxz-supercont1.10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACCGCGCTTGAGCGACGTGCGTGTCGTTTCCCTGCCACGCGACAACGACCAGCTCCGCCTGGCCTTCAGCATCGAAGGCTTGCTGGAGGTGGGAGGT TTCAAGCGCCAGGTGAGTTTTTCCGCATGCCTGGATGGCAGCGGCCAGGTGAAGGTCAGCTAAGGAGGTTTCGATGTCCGGCAAACCCGCAGCCCGCGTT TCCGATCCCACCGCTTGTCCGCTCCCCAGGCACGGCAGCAATCCCATCGGCGTCGGTTCCGCCGACGTGTTCTTCGACGGCCTCGCGGCGGCCCGCCAGG GTGACGCCTCGGCCTGGCGCTGTACTGCTTCGATGCCTGGTTCGTCCATGAGGTCTTCTGAGATGGGCGCGAATCGGGTCGATTACGGAAAGACAACGGA CACCGTGGGTTTCCGATCTTCAGGCCAGAAATGTCATTGCGGTTTTGGCGGCAGCGGTCAGACGACTGCCATCAGTGAAACGATATCCAGCAGGTAAGCC
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| DNA Sequence for Gene |
>AJ67_03475
GTGTCCTTCAATCATTACTACCAGAGCGAACTCACCGCACTGCGCCAGCTGGGGCGCCGTTTCGCCGAGCGTAGCCCGGCCCTGGCCCCGTTTCTCGGGC AGGTCGGACGCGATCCGGATGTCGAGCGCCTGCTCGAGGGCTTTGCCTTCCTGACCGGGCGGTTGCGGCAGAAGCTGGACGACGAGTTGCCGGAACTCAG CCACTCGATGATGCACCTGCTGTGGCCGAACTATATGCGCCCGCTGCCGGCTTTCAGCATTCTCCAGTTCGACCCCCTGACCCGCCCGGGCGGGGCGCTG CGCGTGGAGCGCGATACGCCGGTCGAGAGCCGGCCGGTGGGCGAGGTCGCCTGTCGCTTCCGTACCTGCTACGCCACCGAAGTCCTGCCGCTGGTGCTGG AGGCGCTCAACTATTCGGTGACCGGCGAGGGTGCGCTGCTCGGCCTGCGCCTGGCGATGAACTGCGACGGGCATCTCGGCGAGCTGGGCCTGAGTCGGCT GCGCCTGCACCTGGCCGGCGAGCGCTACATCAGCCAGATGCTCTACCTGTGCCTGCTGCGCAACCTGGAGAGCATCCAGCTGATTCCGCTAGACGCCCAT GGGCGGGCGCTGGATGGCGTGGCCGGCAAGCCGATGTCGTTCCGCCTGACGGGCGAGCGGGTGCAGCCGGTGGGGTTCGCCGAAGACGAGGCGTTGATTC CCTATCCGCTGAATACCTTCCGTGGCTATCGCTACCTGCAGGAATACTTCGCGTTCCAGGACAAGTTCCTGTTCGTCGACGTGGATGGCCTTGACCTGCT CGGCGCTCTGCCCGAGGAAACCCTCAAGCAGGTCCGCGGCCTCGAGTTGCGCTTCGATATCCGCAAGAGCGGCATCCAGCGCCTGCACCCGACGCTGGAG AACGTCAAGCTGTACTGTACGCCGGTGGCCAACCTGTTCCGCCACGATGCGCTGCCGATCCGCCTCGACGGCAAGCAGGACGAGTACCTGCTGATGCCGG CCGAATACAGCCTGGAGGACTGCGGGGTGTTCTCGGTAGAGGGCGTCACCGGCTGGCGGCCGGGCGGGCTCGGCTACCAGGCCTATGTGCCGTTCGAGTC CTTCGAGCACGATCCCAGCTTCGACGTCCCGGAAGCACGGCCCCACTACAGCGTCCGGCAACGGACCTCGTTGCTGCACGATGGCCTGGACACCTACCTG AGCTTCGGCATCCGCCATCCCGAGCAGATCGAGACGCTGTCGGTGGAACTGACCTGCACCAACCAGAACCTGCCCCAACGGCTGCGCCTGGGCGATATCT GCGTCGCCTGCGAAGGCACGCCGGAGTTCCTCGGTTTCCGCAATATCACCCCGGCGACGCCGAGCTACGCGCCGCCGCTGAACCGCGATTTCCTCTGGAA ACTGATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCCAACGTCGACGCGCTCAAGGTGATCCTCGAAACCTACGACCTGCCGCGCTACTACGACCAG CATGCGGCGAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGTCGGTCCGCCACGAGCATGTCGACCGCCTGCATCGGGGCCTGCCGCTGCGCGGCTTGC GTACCGAGCTGACGATCGATCCGGAAGGCTACATCGGCGAGGGCGACCTGTTCGTGTTCGCTTCGGTTCTGAACGAATTTTTCGCGCTTTACGCCAGCAT CAACTCCTACCACGAGTTGCGGGTGAGGAGCACACAGGGAGACGTGTACCAATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGCGGTCCTGCTGGTCATGGATCGCCTGCGCGAGGAATATCCCGGCCTGGGAGACGAGGC GCTCTACGATCAGTTGGAATTCCAGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTCGAAGAGCGTGGCATGCTGCGG GCGCGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTACAGCGAGCAGGCCCTGGGCGACAGCGAGGAGGGCAATC CTACGCGGAACTTCCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTGTTGCCGATCTGGCGCAAGTACCGTTACCGGGTGAGCTTCCAGAGCGGTGC GAGCGATGCGTTCTCCGCTCAGTTGTTCGCCCTCGTCGGATTGGGCGGGGAAGAGATCCGCAAGGCCAGGGAACTGAACTGGAAACGCCTGCTGCCCTAC
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPFLGQVGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSMMHLLWPNYMRPLPAFSILQFDPLTRPGGAL RVERDTPVESRPVGEVACRFRTCYATEVLPLVLEALNYSVTGEGALLGLRLAMNCDGHLGELGLSRLRLHLAGERYISQMLYLCLLRNLESIQLIPLDAH GRALDGVAGKPMSFRLTGERVQPVGFAEDEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDVDGLDLLGALPEETLKQVRGLELRFDIRKSGIQRLHPTLE NVKLYCTPVANLFRHDALPIRLDGKQDEYLLMPAEYSLEDCGVFSVEGVTGWRPGGLGYQAYVPFESFEHDPSFDVPEARPHYSVRQRTSLLHDGLDTYL SFGIRHPEQIETLSVELTCTNQNLPQRLRLGDICVACEGTPEFLGFRNITPATPSYAPPLNRDFLWKLISNMSLNYLSLANVDALKVILETYDLPRYYDQ HAAKVSKRLLGGLKSVRHEHVDRLHRGLPLRGLRTELTIDPEGYIGEGDLFVFASVLNEFFALYASINSYHELRVRSTQGDVYQWKPRMGLQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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