Pseudomonas aeruginosa 3580, AJ67_00948
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3580 adTxz-supercont1.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCTGCTGGCCGAGCAGATCGGTCGCCGCCCGCCGAGCATCGATACCACTGGCCTGCTGCCGCGCGGCGCGCTGGCTGGCTGATCCCCCCTCGACTGGA GCACTCCCATGGAACCGACCCGTATCGCCACCAACGACCGCCTGTCCGCCGCGGTCTGCTTCGACGCCCTGGTATTTCTTTCCGGCCAGGTGCCGGGCCA GGCCGAGGATATCCATGGCCAGACCCGCGAGGTGCTGGCGAAGATCGACGCGCTGCTGGCCGAGGCCGGGTCGCGCAAGGAGCGTATCCTCAGCGCGACC ATCTACCTGAAGGACATCGCCCGCGATTTCGCCGCCCTGAACGAGGTCTGGACCCAGTGGTTGCCGACCGGCCAGGCGCCCAGCCGGACCACCGTCCAGG CGGAGCTGGCGCGTCCGTCGGTGCTGGTGGAGATCACCGTGGTGGCGGCCAGGGGCTGACTTACTTTCCATAGCCATAAGAAAAAGAGGCAGAACCTCCG
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| DNA Sequence for Gene |
>AJ67_00948
ATGAAAACCCTTGTATCCAGCACTCTCGCACTCTCCCTGTCGCTCGCCATCGGCGCCGCGCAGGCCGAGGAACTCAGCGGCACCCTGAAGAAGGTTGCCG ACAACGGCACGATAACCCTGGGTTATCGCGATGCCTCGGTGCCTTTCTCCTACCTTGGCGATAACAGCGGCCAGCCCATGGGCTATTCGGTGGAACTGGC CGGCAAGGTGGTGGAGCGGCTCAAAAGCACCCTCGGCAAGCCGGAACTCAAGGTGAAGTACAACCTGGTCACTTCGCAGACTCGCATCCCGCTGGTGCAG AACGGCACCGTCGACCTGGAGTGCGGCTCCACCGGGGTCACCGCCGAGCGGCAGAAACAGGTGGCGTTCTCCTACGGCTTCATCTACGTCAAGGGCCAGT TGCTGACCCGCAAGGACAGCGGCATCGCCCACTTCGACGACCTCAAGGGCAAGAACGTGGTGACCACCGCCGGCACCACCAACGAGCGCTACCTGAAGAA CTACAACGCCGAACACAAGCTGGGGATGAACGTGGTCAGCGCCAAGGACCACGGCGAAGCCTTCCAGATGCTGCAATCGGGTCGCGCGGTGGCTTTCTAC ATGGACGATGCGCTGCTCTACGGCGAACGCGCCAAGGCGCGCCAGCCGCACGACTGGGTGGTGGTCGGCGAGCCGCAATCGCGGGAGATCTACAGCTGCA TGGTGCGCAAGGACGACCCGCAGTTCCTTGCCCTGGTCAACGAGACCCTGGCCGGGCTGTATCGCTCGGGCGAGATACAGGGCATCTACCAGCGCTGGTT CCAGCAGCCGATCCCGCCCAAGGGGCTGAACCTGGAGTTCCCCATGACCGCGGAGCTGAAGGCGATCCTCGAGAACCCCACCAGCGATCCGGTGCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCTAGCGCTGCAGGCCAAGGTGGCGGATCGACGGCGTCGGCGCGTCCAGGCGCGACCAGACGTCGTCGGCCAGTTCGGCCGGATAGAAAGACGGCAG GCCAGGCAGTTCGTCGCGGGCGATCCAGCCGACCTCGCGGATATCGAACTCGTCGCCGCCCAGGCCCTTCAGGTTGGCCAGGGTCGGCTCGCCACGCCAG GCGTCGATGCGGTAGAACAGCTCCATGTGGAAGCGCCCGGCGGCGGGTTCGGCGAATTCGCGCACGTAGACCAGCGGGCCGACGTCCACCCGCAGGCCGG TCTCCTCGAAAAACTCGCGCCGGACGGTATCCTTCGTCGATTCGTCGCATTCCGACTCGAAGCCGCCGCCGGGCGGAATCCAGTAGATGTCGCCGCCGAC CTCGTGGCGGACCAGCAGAATGCGTTGCTCCACCACCAGCAGGCCGGCGGCGCGGATACGGTGTCGCAAGGCCTCGGCCATGCTCGTTCTCCCGGCGCCA
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| Amino Acid Sequence |
>ABC transporter
MKTLVSSTLALSLSLAIGAAQAEELSGTLKKVADNGTITLGYRDASVPFSYLGDNSGQPMGYSVELAGKVVERLKSTLGKPELKVKYNLVTSQTRIPLVQ NGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTRKDSGIAHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVSAKDHGEAFQMLQSGRAVAFY MDDALLYGERAKARQPHDWVVVGEPQSREIYSCMVRKDDPQFLALVNETLAGLYRSGEIQGIYQRWFQQPIPPKGLNLEFPMTAELKAILENPTSDPVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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