Pseudomonas aeruginosa 3580, AJ67_00068
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3580 adTxz-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTATCGGACCGTTGAACGTTACCTGCATCCAGGCGCCGGTATTCTTCGGCGATAGCCTCAGCGTGACCCTGCAGTGCGCGGAACCGGTGGACCTGGCCGC GGTGACGCGGGTCCTCGATGCGACGAAAGGTATCGAATGGGTCGGCGAGGGCGATTATCCGACGGTGGTCGGCGATGCCCTCGGCCAGGACGAGACCTAT GTCGGCCGGGTGAGGGCGGGGCAGGCTGATCCCTGTCAGGTCAATTTGTGGATTGTGTCTGATAATGTGCGAAAAGGTGCCGCGCTGAATGCCGTGCTCC TGGGTGAGTTGTTGATAAAACACTATCTGTAAAAGATACTTACCCACAGATTTGTAGAATTATTCGAGCTTGTTAATACTGGTTCGATCCGCTGCTGCCG GGGAGCGTCCGTCCATGCATGGCTGGGCGAGCGGACAGCAAGCACCGACGCACTCCCTCTCGTGAAACGAGAAAAGATATTAAAACCAAGGGATTACACT
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| DNA Sequence for Gene |
>AJ67_00068
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACTGGGGGAAATCACCCTGAAGT CGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTTCGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTT CAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGACCTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCG AAGCCGGTGCAGGAGCCCTACCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAGGCTCCGGCTCCGGTGCGTAC CACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGATCGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAG GCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCGTCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGC AGATGCTGGAGCGCTCGCCGCGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAATCTGCGCCTGGTGTCTGGCGAGGGCAAGGCC AGCAAGGGTGCCGACAAGGGCGGAAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCGGTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACG AAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAGTTGGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCA GTTGGGCGCCGAAGGCCAGGGCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT CCTGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCCCGCGCCAGCTGCCGAGAAGC CTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGAGCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGC GGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTGCTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCC GCGGATGCCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGCTG CGCCGCAGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCTGAACTGTT GCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAG GAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGG CCGGCGCCAAGCTGGCGCAGGACGAGCTGGATAGCTTCAGCCTCGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCGGGGCGCTGGACGACCTGACC CTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTCGACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGA GCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGATCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGA GGTGCCCGCCGCGGCGCCAGCCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCA ACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCTCCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCT CTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTG GCCGAAGGTAACGACAGCCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGGAAATGAAGCGACCCTCATGAACGATGTTGTTCCGCCAGCGGCAGCCGAATCGGCTGCCGCTGGCGTTTCCAGAATCGCCCTCGGCATCGAGTACA AGGGCTCCCGCTATCGTGGCTGGCAGCGCCAGGAAGCCGGCGTGCCTTCCGTGCAGGAAGCGCTGGAGCGCGCCTTGTCGAAGGTTGCCGCCGAGCCGGT CGGGGTGATCTGCGCCGGCCGTACCGACGCTGCCGTTCATGCCAGCGGCCAGGTGGTGCATTTCGACACCGCGGTGGAGCGCCCGTTGAAAGCATGGGTG ATGGGCACCAACGCCAACCTGCCCGCGGATATCAGTGTGACCTGGGCGAGGGTGATGCCGGCGCATTTCCACGCGCGCTTCTCGGCCATGGCCCGGCGCT ATCGCTACGCCATCTACAACGATCCGATCCGCCCGGCGCACCTGGCCGAGGAGGTCACCTGGAACCATCGGCCGCTGGATATCGGGCGGATGCGCGAGGC
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| Amino Acid Sequence |
>peptigoglycan-binding protein LysM
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTDLKFTPVVKPNGKSVIRVTSS KPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQAPAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQ AMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSPREALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKA SKGADKGGKGDSKAIADTLAVTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMILSRRNAQKEKEEAQAFA ADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQ ENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLT LDSDLDLAASTAADKPVDDLDFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARAYIDMGDSEGARDILDEVL AEGNDSQQAEARELLERLA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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