Pseudomonas putida HB3267, B479_21065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida HB3267, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCACCAGGCTGGCCTGCTCCTGCCAACGCGCCAGCAGCACCAGATACACCTGCACGGTCAGGCCGAACCAGCCCAGCACGGCCATGCCGGTCAGCCAGGG GCGACGCGGCATGTCAGGCCTGGCGCTGCAGCTTCACGTACAGCTGCTCGACCTTTTCCCGTGCCCACGGCGTCTTGCGCAGGAAGGTCAGGCTCGACTT GATGGTCGGGTTGCTTTTGAAGCAGCGCACATCGATGCGCTCGGCCAGGCCCTGCCATTGGTAGTGCGCCACCAGCTCGGTGAGGATCTGTTCGAGGGTC TTGCCGTGCAGCGCGTTGTGTTGGGCCGTGCTCATGCCAGTGCTCCGTAGGAAAGATGCGCACCTTACACGAGTGTAGTGGTGGGTGGGATCAGGTGAGT CAACAGAAAAACCGCTGGCCAGGCGCAAAACCTCTGTGCTGAAATAGAGATGTTATATTGTAACAATACAAAAGCATCTGCCAAGGAACGCCCCATCCCC
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| DNA Sequence for Gene |
>B479_21065
ATGCTGTACACACCGCTTCGCCTCTCTCCCCTCGCCGTCGCGCTCTGGCTTGCCGCACCACCCAGCCAAGCGGTGGAGCTCGAGCCCCAGGTCATCACCG CCAACCCTTTGGGTAACAGCCAGCTGGCCGCCCCCAGCACCGTGCTCGAAGGCGACGACCTGCTGCAACAGCAGCACGGCAGCCTCGGTGAAACCCTGAA CAAGCAGCCCGGAGTCGCCTCCACCTGGTTCGGCCCTGGCGCCAGTCGCCCGGTAATTCGTGGCCTGGATGGCGACCGCATTCGCATCCTGCGCAATGGC GTCGGCGCCCTCGACGCTTCATCACTGTCCTACGACCACGCCGTGCCGCTGGACCCGGTGACCGTCGACCGTGTCGAGATCGTCCGTGGCCCGGCCGCCC TGCTCTACGGCGGCAACGCCATCGGCGGCGTGGTCAATACCTTCGACAACCGCATCCCGGATGCCCCCATCGAGGGCATCCACGGTGCCGGTGAACTGCG CTACGGCGGCGCCGATACCACCCGCAGCAGCGCTGGCAAGCTGGAGGCCGGCAACGGTGCCTTCGCCCTGCACCTGGATGCCAACAGCCGCCAGTTCAAC GACCTGCGCATCCCCGCTTACGCGCGCAGTTCCAAGGTGCGCGATGCCGACGAACCCGGCAGCAAGCACCGCCTGGAAAACAGCGACGGCCGCCAGGACG GTGGCGCCCTGGGTGGCGCCTACCATTGGGACCACGGTTACGCCGGCCTGTCGTACAGCCGCTACGACAGTAACTATGGCTCGGTGGCCGAGCCAGGTGT GCGCCTGGACATGAAGCAGGACCATTACGCCTTCGCCTCCGAGCTGCGTGACCTGGACGGCCCCTTCACTTCGATCAAGGTCGATGCCGGCTACACCGAC TACGAGCATCGTGAAATCGAAGAAGGCGAGGTCCACACCACCTTCAGGAACAAGGGCTATGAAGCACGTATCGAAGCTCGCCACCAACCGCTCGGGCCGG TAGAAGGCGTGATTGGCGCCCAGGTCAGCCGCAACGAATTCTCCGCGTTGGGCGAGGAAGCCTTCGTCCCGCACACCGACACCGACAGCCTGGCGCTGTT CATGCTGGAGCAGTGGCAAGCCACCGAGCGCCTCAACCTGAGCCTGGGTGCACGCATGGAGCACACCCGGGTCGATCCGGATGCCAAAGGCAACGAGAAC TTCGCCGACGCCGACAGCGCCAGCAGTTTCAACACCTTCAGCCTGTCTTCCGGGGCGGTGTACCAGCTCGACCCAGTCTGGTCGCTGGCCGCCAACCTCG GCTACACCGAGCGCGCCCCGACCTTCTACGAGCTGTATGCCAATGGTGCCCACGTGGCCACCGGAGCCTTTGAAGTCGGCGATGCCAGCCTGAACAAGGA AAAAGCCGTTTCCGCCGACCTGGCCCTGCGTTTCGACAACGGCACCCACAAGGGCAGTGTCGGGGTGTTCTACAGCCACTTCCGCAACTACATCGGCCTG ATCAGCACCGGCAACATCCGCGAGGGGCATGACCACGATCATGATGAGGATGACCACGACCATGATCACGATCATGACCACGGCGGTTTCCCGGAGTACC AGTATCAGGGCGTGCGGGCGCGATTCTATGGCATCGAGGCCCAGGATCGCTGGCAGCTGGCCGAGAACCGTTACGGCAGCTTCTCGTTGGAAGTGTCTGG TGACTACACCCGGGCCAAGAACCTGGACAGTGGCGAGCCGCTGCCCCGCATCGCCCCGCTGCGCCTGAACAGCGGTCTGGTCTGGGAGCTGGACCGCTGG CAGGCGCGGGTCGACGTGCAACACGCTGCGTCTCAGCATCGCAAACCGGCCAACGAAACCAGCACTGATGGCTATACCACGCTAGGGGCCAGCGTTGGTT ACCGCTTCGAAGTTGGCCAGAGCCAGTGGCTGGCGTTTGTGCGCGGCGAAAACCTGACGGACCAGACCGTGCGCTATGCCAGCTCGATCCTGCGCGACAT CGCCCCGGCGCCGGGGCGTAGTGTGGAAGTGGGTCTGCGTACCACCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCGTGGGGGCGCTTCGCGCCCCTTTCGCCGGCAAGCCCCACCGGTATTGCTTCTGCCTCAAGTGCAACGCCATCCTGTGGGAGCTGGCTTGCCGGCGA TTGGGCTGCAAAGCAGCCGCCTCTGCAGCCAATTATTACCTGTCGAACAACAATCCACTGCGACAATTTGTCTTTTTTTCTTACAACTTCCCCTATATCC TCCCCGCCGCAAGCTGAATCGCTTCATTGAAACCATCTTGTCGCCATTTCCATTGAAGGGCCCGCCCTTCGATGCGCTTGCCGTTTATTCAACAATCAGA AGATAGCGCTATCTCATGCTCCAACTGCCCAAAACCTGTTACATCGGCCTAGCCCTCAGCGCCCTGGCGGCTCCCAGCAGCGCCAGCGAGATGTTCGCCA GCGATTCGCCATGGATGCTCGGCGACTGGGGTGGCACCCGCAGCGAACTGCTGGAAAAAGGCTACGACTTCACCCTCGGCTACACCGGCGAGATGGGCAG
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| Amino Acid Sequence |
>TonB-dependent receptor
MLYTPLRLSPLAVALWLAAPPSQAVELEPQVITANPLGNSQLAAPSTVLEGDDLLQQQHGSLGETLNKQPGVASTWFGPGASRPVIRGLDGDRIRILRNG VGALDASSLSYDHAVPLDPVTVDRVEIVRGPAALLYGGNAIGGVVNTFDNRIPDAPIEGIHGAGELRYGGADTTRSSAGKLEAGNGAFALHLDANSRQFN DLRIPAYARSSKVRDADEPGSKHRLENSDGRQDGGALGGAYHWDHGYAGLSYSRYDSNYGSVAEPGVRLDMKQDHYAFASELRDLDGPFTSIKVDAGYTD YEHREIEEGEVHTTFRNKGYEARIEARHQPLGPVEGVIGAQVSRNEFSALGEEAFVPHTDTDSLALFMLEQWQATERLNLSLGARMEHTRVDPDAKGNEN FADADSASSFNTFSLSSGAVYQLDPVWSLAANLGYTERAPTFYELYANGAHVATGAFEVGDASLNKEKAVSADLALRFDNGTHKGSVGVFYSHFRNYIGL ISTGNIREGHDHDHDEDDHDHDHDHDHGGFPEYQYQGVRARFYGIEAQDRWQLAENRYGSFSLEVSGDYTRAKNLDSGEPLPRIAPLRLNSGLVWELDRW QARVDVQHAASQHRKPANETSTDGYTTLGASVGYRFEVGQSQWLAFVRGENLTDQTVRYASSILRDIAPAPGRSVEVGLRTTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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