Pseudomonas aeruginosa 3577, AJ64_02473
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3577 adTvG-supercont1.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCTTTTCGCGCAGTTCTTTCTGCGCGGCGCGGAATTCGGCGTTGTACTGCCAGGAGCGTTCGCTGCCGTCCTGGGCCTGGGCAGTGGCGGCGCCGGTC GCCAGCAGGGCGGCCAGCAGCATCGGGATGATCTTCATGGCAAACCTCTCGGGTTGGCTCGTCGCCGGGGCGAGGTATTCGTCCCGTTTGAGCAAAGAGT AAGAGCGGACGGATTACCCGAGGGTGAGTGGAAAATTACGTTTCCGATAACTTCGGCGATGCTCCGTTGCATGGCGGAGGAGTCTGCGCGAAGCGCATTA AGTGCGAGTTAAGATTGCGGAAAAGTAATCCCCGCCTCATGTCTGCGTCATTTCCCCGGTTCCAGAATCAGCCCCACGGTCAATGCCGGTTGCGGCAGGA CTGCGCGGGGGCGCGATCGACCAGAAGTTCACGCACAGCCAGCGCCGCAAGGCATGGCCGCAGAAGAAAAACAGACATGAACCGATCTGGAGCAATCGCC
|
|
| DNA Sequence for Gene |
>AJ64_02473
ATGCAAGGGGATGGAAAGAAACGACTGTGGACGCTTCCACTGCTGCTGGGCGCCGGACTGATGGCCTCGGCCGTCGCCGAGGAGAACGCCGAGCGGAGCA AGGAAGGTTTCATCGAGGGCAGCGAGGTCAACCTGCTGCTGCGCAACTTCTACTTCAACCGCGACTTCCGCAAGGGCCAATCGAGCCCGGCGGGCGGCGG CTACACCGAGGAGTGGGTGCAGGGCTTCATGGCCAACTTTTCCTCGGGCTTCACCCAGGGCACGCTGGGCGTCGGCATCGACGCCTTCGCCCAGCTCGGC GTGCGCCTGGACAGCGGCGGCGGGCGTTCCGGCGCCGGCGGTAGCGTCGACCTGCTGCCCTATGACGACCAGGGGAGGCCGCAGGACGACTATTCGCGAG CCGGCGGCGCGGTCAAGCTGCGCTGGTATGGCACCGTGCTGCGGGTCGGCGACGTGTTCCCGGAAACCCCGGTAATCCAGTACGGCAACAGCCGGCTGTT CCCCTCCAGCTTCCGTGGCTTCACCCTGGTCAACGACAGCCTGGCGAAGGGCCTGACCCTGCAGGCCGGCAAGCTGAACTCGATGACCCAGCCGAACAGC ACCAGCGGCAGCGACGACTTCTACAGCTTCTACACCGGCCGGCGCATCGACTCGCCGTGGGTCGCCTACGCCGGCGGCGACTACCAGGCCACCGAGCACT GGAGCGTCAGCCTCTACGGCAGCCGCCAGAAGGACGCCTGGGACCAGTACTACGCCGGCACCAGCTTCAACTATCCGCTGGACGACAAGCTGTCCCTGCT CGGCGGCGCCAACTACTACAAGGTCAAGGACCAGGGCAGGCAGGTGATGGGCGAACTCGACAACGACATCTGGAGCGTGCGCGGCGGCTTCGCCTACGGT CCGCACCAGGTGCTGCTGTCGTACCAGCGCAACAACGGCGACGACGACTTCGACTACCTGCGCCAGACCGACTCCATCTACCTGGACAACTCGATCCAGT ACAGCGACTTCAACTCGCCCAAGGAACGCTCGCTGATGCTCCGCTACGACCTCGACATGGCCGCCTTCGGCGTGCCGGGGCTGAGCTTCATGACCCGCTA TGGCAAGGGCTGGGACGCCGATTATTCGAATGCCAACAGCGTCTACATGCGCACCGACGCCAACGGCAACCCGCTGACCAACCAGGGCCGCTGGGAACGC GACGTGGAGGTCAAGTACGTGGTGCAGGGTGGCGCGGCCAAGGACCTGGCGTTCCGCGTGCGCCAGGCCACCGTGCGCTCCGACAGCTTCGAGTCGGACC TCGACGAAGTCCGCCTGATCGTCGAATACCCGCTGCAAGTCCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGGCGCGCCGCCGCCCCGTCCGGGGCGGCGCTCTGCGACAGCCCGTTGCTGGCGGCTGCGCGGCGGCGCTGCTACTTTCCTCTGGGTAGGCGGGCCGAAG GGCGGTTCCTGGCCGGGCATGGCTTCGACCTGCCGGTGGGCGCCGCGACCCGAACCTCGGCCACGCCATTCCACCCATGCCGCCCGGGCACCGGCGTGCC CGTGGCAGCCCAGGCTACGGGCGCCGCGTAGCCAGCCAAGCGGGAGTCGACATGGCCTCGTGGACCTTGGTGGACGCCAGTGCGATCGCTGTCCGCCATC CCTACACCTTCTACAAACCGGACGCGGAGACCATCGACCGGGTCGCCGCCGGGGAAAGCGTCAAGCTGATCTTCGCCTTCGATACCGACAACCCCGATGC GCCGCGCGCCGAGCGGCTCTGGGTGACGGTCGAGGGCATCGAGGCGGATGGCGCCTTCAGCGGCCGCCTGGACAACTATCCGCAATACATCCGCGACCTG
|
|
| Amino Acid Sequence |
>porin
MQGDGKKRLWTLPLLLGAGLMASAVAEENAERSKEGFIEGSEVNLLLRNFYFNRDFRKGQSSPAGGGYTEEWVQGFMANFSSGFTQGTLGVGIDAFAQLG VRLDSGGGRSGAGGSVDLLPYDDQGRPQDDYSRAGGAVKLRWYGTVLRVGDVFPETPVIQYGNSRLFPSSFRGFTLVNDSLAKGLTLQAGKLNSMTQPNS TSGSDDFYSFYTGRRIDSPWVAYAGGDYQATEHWSVSLYGSRQKDAWDQYYAGTSFNYPLDDKLSLLGGANYYKVKDQGRQVMGELDNDIWSVRGGFAYG PHQVLLSYQRNNGDDDFDYLRQTDSIYLDNSIQYSDFNSPKERSLMLRYDLDMAAFGVPGLSFMTRYGKGWDADYSNANSVYMRTDANGNPLTNQGRWER DVEVKYVVQGGAAKDLAFRVRQATVRSDSFESDLDEVRLIVEYPLQVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|