Pseudomonas putida HB3267, B479_14090

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida HB3267, complete genome. [Details]
DNA Sequence Upstream of Gene
CAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGGCCCTGGAGCACAGCGGCCAGGTCATCCGCATCACCAGCCCGACCCGCTGGGTGGTGGGC TTCCACGCCTTCGACCTGGCGCGGTTTCGCAACGTCATCAAAGACCCCAACCGCAGCAGCGCCGAGCTGTACCGCTTCGTGGTGCACTACCTGGTGCTGT TCTACTGCCTGAGCAAGTCGCCTGGCCTTGGCCGGCTGTTCGAGGGCCTGCGCTACAACCTCAGCTTCGAGCGCCTCAAGGGCTTTGGCGACCTGCCGTT CTGCGTCATCAGCTCGCCGGTGCGCTCTGAACTGCCCGACGACTCGGTCATCCGCAGCAGCACGCAGATTGCCGGCAACACCAGCTTCGAAGAGCTGGTG GGCCGCGACAACATCCTGGAAATGAACGACGAAATCCGTCAGCGCCTGCTGCTGACGATCGAAGGACTGTAACGCGCAGCGCCCGGCAACGGGCCGCGCA
DNA Sequence for Gene
>B479_14090
ATGATTCGCAGCGAATTGCTCGCACTGGAGAACACGATGGCGAAGAAGGAAAGCACTCAGCACAAACTCGACCGCGTTCGCGCGCCTCGGGTCCATATCA CCTACGACGTGGACATCGGCGATGCCATCGAGAAAAAGGAGCTGCCCTTCGTCGTCGGCGTACTGGGCGACTTCTCCGGCAACCCGCTGGAGCCCCTGCC CAAGCTCAAGGACCGCAAGTTCGTGTTCATCGACCGCGACAACTTCAACGGCGTGCTCAAGGGCATCAAGCCACGCCTGACCTACCGCGTCGACAACACC CTGGCCAAGAACGGCACCCAGCTGGGCGTGGAGCTGAACTTCAACAGCCTCGAAGACTTCGAGCCACAGAACGTGGTCAAGCAGGTGGAGCCGCTGCGCA AGCTGCTGGAAGTGCGCAACAAGCTGGCCGACCTGCGCAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGACGTGCTGCAGAACACCGA GAAGCTCAAGACCCTGGGCAAGGAATTCGGCCGTGAAGCCGAAGTGAAAGACCCATCCAGCAGCGATCGCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAGGAGCCCGAACATGACCGACAAGCAAACCGCACCGCAACAGGCCGGCGACCTGGTCGAAGTGGAAAACTTCGCGCCACAGGCATCGTTGCTCGACAG CATCATTTCGCAAAGCCGCGTGGCCCGCTCCGACACCGAGCGCAACCGCACCCGCGACCTGATTGGCGAACTGGTGAACCAGGTGCTCGAGGGCGAGATG ACCCCGAGCAAGGACCTGATCGCCGTGCTCGATTCGCGTATCGCCGAGATCGATTCGATGCTTTCCGAGCAGATGAACGAAATCATGCACGCCCGTGAGT TCCAACAGCTGGAAGCCTCCTGGCGCGGCCTGAAATACCAGGTAGACCAGACCGAGACCAGCACCACGCTGAAGATCCACCTGCTCAATGCCTCGAAGAA AGACCTGGTACGCGACCTGAAGGCCGCCAGCGAATTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAAGAAGAGTACGGCACCTTCGGCGGCGCGCCT
Amino Acid Sequence
>type VI secretion protein
MIRSELLALENTMAKKESTQHKLDRVRAPRVHITYDVDIGDAIEKKELPFVVGVLGDFSGNPLEPLPKLKDRKFVFIDRDNFNGVLKGIKPRLTYRVDNT LAKNGTQLGVELNFNSLEDFEPQNVVKQVEPLRKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTLGKEFGREAEVKDPSSSDRA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site