Pseudomonas aeruginosa 3576, AJ63_03096 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3576 adVri-supercont1.11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCAATCGCCGTGGTCACGCTGCTCCGGCGCAAGCGGGGCGGACGGCGCGAACCTTGCAGCGAAGCCTTCCTGACAATCCGACAGGGAGAACCATGGTGA ACGGAGAAAACAAGATCGTCCTGGTCCTCGAAGAACACGCCGACCAGCTCTGGCGGATCGAGGAATTCCTCCTCGATCGAGGCTACGCGGTGCTCAGCGC GGCGAGTCGCGACGAAGCCCTCGACCACCTGGCCTCGGACGCGGTGATCGACCTGTTCCTGCTCAGCGAGCAGCTCGAAGGTCCTCTGAGCGGCAGCATG CTCATCGAAACCAGCCTGCCGGTGCGCCCGCGGATGCGGGTGATCCTGCTCAGCGACAGCGCTCGCGTCGGCATCGACCCGGCGGCACCCTATCCGGTGC TGCTCAAACCGGTGACCCTGGAGGAACTGGGGAAAGCCATCGACATGGTCCTGCACAGCGCGCCGGTCTGCCCCGGCGTCTGACCACCGAGGAGCCCACC
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| DNA Sequence for Gene |
>AJ63_03096
|ligD
ATGCCCAGCAGCAAGCCGCTCGCCGAGTACGCCCGCAAGCGCGATTTCCGCCAGACCCCGGAGCCCAGTGGCCGCAAGCCTCGCAAGGACAGCACCGGGC TGCTCCGCTATTGCGTCCAGAAGCACGACGCCAGCCGCCTGCACTACGACTTCCGCCTGGAGCTGGATGGCACCCTGAAGAGCTGGGCGGTGCCCAAGGG GCCGTGCCTCGACCCGGCGGTGAAGCGGCTCGCGGTGCAGGTTGAGGACCATCCGCTGGACTATGCCGATTTCGAAGGCAGCATCCCCCAGGGGCACTAC GGCGCCGGCGATGTCATCGTCTGGGACCGAGGCGCCTGGACGCCTCTGGACGATCCGCGCGAGGGCCTGGAAAAGGGCCATCTCAGCTTCGCCCTGGATG GCGAGAAACTCTCCGGGCGTTGGCACCTGATCCGCACCAACCTGCGCGGCAAGCAGCCCCAGTGGTTCCTGGTCAAGGCCAAGGACGGCGAGGCGCGCAG CCTGGATCGCTTCGACGTGCTGAAGGAGCGTCCCGACAGCGTGCTCAGCGAGCGTACGCTGCTGCCCCGCCATGGCGAAGCCGCCACGCCCGCGGCCAGG CCGGCGCGACGCGGCAAGAGCGGGGGGAAGACGCCGATGCCCGAATGGATCGCCCCCGAGCTGGCCAGCCTGGTCGAGCAGCCTCCGCGAGGGGAGTGGG CCTACGAACTCAAGCTGGACGGCTATCGGCTGATGAGCCGCATCGAAGACGGCCACGTGCGCCTGCTGACCCGCAACGGCCATGACTGGACCGAACGCCT GCCGCACCTGGAGAAGGCCTTGGCCGGGCTCGGTCTGCAGCGCAGTTGGCTGGACGGCGAACTGGTCGTCCTCGACGAGGAGGGTCGACCGGACTTCCAG GCCCTGCAGAACGCCTTCGAGGAAGGTCGCGGCGAGAACATCCTGTACGTCCTCTTCGACCTGCCGTACCACGAAGGCGAGGACCTGCGCGATGTCGCCC TGGAGGAGCGCCGCGCGCGCCTGGAGGCGCTGCTGGAAGGGCGAGACGAAGACCCGCTGCGGTTCTCCGCGACGCTCGCGGAAGACCCCCGCGACCTGCT GGCCAGCGCCTGCAAGCTCGGTCTCGAAGGCGTGATCGGCAAGCGTCTGGGCAGCGCCTACCGTTCGCGCCGCAGCAACGACTGGATCAAGCTGAAGTGC CAGTTGCGCCAGGAGTTCGTGATCGTCGGCTATACCGAGCCGAAGGGCTCTCGCCGGCATATCGGCGCCTTGCTGCTCGGCCTCTACAGCCCTGACGAGG AGCGCCGGCTGCGCTATGCCGGCAAGGTCGGCAGCGGCTTCACCGCGGCCAGCCTGAAGAAGGTCCGTGAGCGCCTGGAACCCCTCGCGGTCCGCTCCAG CCCATTGGCGAAGGTGCCGCCGGCGCGCGAGACCGGGTCGGTGCAGTGGGTGCGCCCGCAACAGCTGTGCGAGGTTTCCTATGCGCAGATGACCCGTGGC GGGATCATCCGCCAGGCAGTGTTCCACGGCTTGCGCGAAGACAAGCCGGCGCGCGAGGTGACCGGCGAGCGTCCCGCCGGCCCGCCGCCGCTGCGCGGCG CGCGCAAGGCCGGCGCCGGTGCGTCGCGGGCGGCCACCGCCGGCGTGCGCATCAGCCATCCGCAGCGGCTGATCGACCCGTCGATCCAGGCCAGCAAGCT GGAACTCGCCGAGTTCCATGCGCGCTACGCCGACCTGCTCCTGCGCGACCTGCGCGAGCGCCCGGTGTCGCTGGTGCGCGGCCCCGACGGAATCGGCGGC GAACTGTTCTTCCAGAAGCACGCGGCGCGCCTGAAGATCCCCGGCATCGTCCAGCTCGACCCGGCGCTCGATCCCGGTCATCCGCCGCTGCTGCAAATCC GCAGCGCCGAGGCGCTGGTCGGCGCGGTGCAGATGGGCAGCATCGAATTCCATACCTGGAACGCCAGCCTGGCCAACCTGGAGCGGCCCGACCGTTTCGT CCTCGACCTCGACCCGGACCCGGCGCTGCCGTGGAAGCGCATGCTCGAAGCGACCCAGCTGAGCCTGACGTTGCTCGACGAGCTGGGCCTGCGCGCCTTC CTCAAGACCAGCGGCGGCAAGGGCATGCACCTGCTGGTGCCGCTGGAGCGCCGGCATGGCTGGGACGAGGTCAAGGATTTCGCCCAGGCCATCTCCCAGC ACTTGGCGCGCCTGATGCCGGAGCGTTTCTCGGCGGTTTCCGGGCCGCGCAACCGGGTCGGCAAGATCTTCGTCGACTACCTGCGCAACAGCCGCGGCGC CAGCACCGTGGCCGCCTACTCGGTGCGCGCCCGCGAAGGGTTGCCGGTGTCGGTACCGGTGTTCCGCGAGGAACTCGACTCGCTGCAGGGCGCCAACCAA TGGAACCTGCGCAGTCTGCCGCAGCGCCTCGACGAACTCGCCGGCGACGATCCCTGGGCCGACTACGCCGGCACCCGCCAGCGCATCAGCGCGGCCATGC GGCGCCAGCTCGGGCGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGTCCGCGAAAAAGGCGGAACTCCCCCGGCGCACAGGGCCTCCACCGTGCAACGAGATGCCGAGGAGGCCCCCGATGGATACCGCCTACCTGATCCTCG CGCTGCTGGTCCTGTTGCTCCTGGTGGATGCCTGGGCCATCAACAGCGTGCTCCGCAGCGACAGCTCCGCCAGTCGCAAGCTCGGCTGGTCGCTGCTGAT CCTGCTCCTGCCCGTGCTCGGCCTGGTCCTCTGGGGCTGGACCGGCCCCCGTGGCTTGCGCCCGGTGACCTCGCCGGAACACAGCAAGTGAATCCCACTG GAGACTGCCCATGAACAGCGAAACCTGTGCCTGTCCCAAATGCACCTGCCAGCCCGGCGCCGATGCCGTCGAACGCGACGGCCAGCACTATTGCTGCGCG GCCTGCGCCAGCGGCCACCCCCAGGGCGAGCCGTGTCGCGACGCCGATTGCCCCTGTGGCGGCACCACCCGGCCCCAGGTGGCGGAGGATCGCCAGCTGG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGHY GAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQPQWFLVKAKDGEARSLDRFDVLKERPDSVLSERTLLPRHGEAATPAAR PARRGKSGGKTPMPEWIAPELASLVEQPPRGEWAYELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGELVVLDEEGRPDFQ ALQNAFEEGRGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATLAEDPRDLLASACKLGLEGVIGKRLGSAYRSRRSNDWIKLKC QLRQEFVIVGYTEPKGSRRHIGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRG GIIRQAVFHGLREDKPAREVTGERPAGPPPLRGARKAGAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGG ELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAF LKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQ WNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQLGRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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