Pseudomonas aeruginosa 3576, AJ63_02123

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa 3576 adVri-supercont1.6, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGCCAGCCCGCTGGCCGGCAGCGAACGCGGCGAGCTGGCCGGCGCCGCGCTGGTGCAGTTGCAGGCCACCTGGCGGCAGTGGTGCCGCAGCCATGCTCC GGCCGGGACGGCGCTGCGCGCGGACCCGCTCCCCGGAGCCGGGCGCTAGTTCTGCGGTGGCCGCCCACATTGACCGCGCAAGCCCCGAACCACTAAGCTG CGCGCCTTGCGACAGGTGCCCCGCAAGGGGTGAAACAGGGAAGCTGGTGCGTTCCGTCGGAACCAGGCCAGCGCTGCCCCCGCAACGGTAGGCGAATCAG ACAGCCGCTCGATGACCACTGTGCTCCGGCATGGGAAGGCGCGGCTGGAAGCGTCCAGCGCTTCGCTCGCGAGCCCGGAGACCGGCCTGACGCACCCACG GCATCGCGGAGGGCGCTGTCGGACGTCTCCTGCCGTCGCTTCGTCCTCCGTCTGCCTCAACCCAGGTCGCGCGGGTGAGAGCGACGGAGCAGCGTAGAGC
DNA Sequence for Gene
>AJ63_02123
ATGAACAGAGTTTTCCTGACCCCGGCAGCCGTGGCGCTGTGCGGCGCGTCTTCCCTGAGCCTGGCCGAACCGGTCAGCCTTGCCGACCAGGTGGTGACCG CCACCCGTACCGCCCAGACCGCTTCCCAGAGCCTGGCGGCGGTGAGCGTCATCGACCGCGAGGATATCGAGCGCAGCCAGGCGCGCAGCGTGCCGGAGCT GTTGCGCCAGGTACCCGGCGTGTCGCTGGCGAACAACGGCGGTTTCGGCAAGAACACCACGCTGTTCCTGCGCGGCACCGAGTCCGACCATGTGCTGGTG CTGATCGACGGCATCAAGGTCGGCTCGGCCAGCGCCGGCCTCACCGCGTTCCAGGATTTGCCGGTGGAGCTGATCGAGCGCATCGAGGTGGTCCGCGGGC CGCGTTCCAGCCTGTACGGCTCGGAGGCCATCGGCGGGGTGATCCAGATCTTCACCCGGCGCGGCGACGGCCAGGGCGCCAAGCCGTTCTTCTCCGCCGG TTACGGCACCCATCAGACCCTGGAGGGTAGCGCCGGGGTCAGCGGCGGCGCCGGCAACGGCTGGTACAGCCTCGGGGTGAGCAGCTTCGATACGGCGGGG ATCAATACCAAGCGCGCCGGTACTGCGGGCTATGAGCCAGACCGAGACGGCTACCGCAACCTGTCCGGCAACCTGCGCGGCGGCTATCGCTTCGACAATG GCCTGGAACTCGACGGTACCCTGCTGAGGGCCAAGTCGCACAACAACTATGACCAGGTCTTCGGCAACTCCGGTTTCAATGCCAACGCCGACGGCGAGCA GAACCTGGTCGGCGGCCGTGCCCGCTTCACTCCGTTCGATCCCTGGCTGGTGACCCTCCAGGCCGGGCGCAGCGAGGACAAGGCCGATGCCTATCAGGAT GGCCGTTTCTACTCGCGCTTCGATACCCGTCGCGACAGCCTGTCCTGGCAGAACGACCTGACCCTGGCCGAAGGCCATGTGCTGACCCTCGGCTACGACT GGCAGAAGGACGAGATCAGCAGCAGCGAAGCCTTCAGCGTCGACTCGCGGCTGAACAAAGGCTGGTTCGCCCAGTACCTCGGCCAGTACGGTCGCCAGGA TTGGCAACTGAGCCTGCGCCGCGACGACAACCAGCAGTTCGGCGTGCACGACACCGGCAGCGCCGCCTGGGGCTACGCGCTGAGCGACGCGCTGCGCTTC ACCGTCAGCTACGGCACGGCGTTCAAGGGGCCGACCTTCAACGAACTCTACTACCCCGACTACGGCAATCCCGACCTGGACGCCGAGACTTCGCGCAGCC TGGAAGTCGGGCTGAGCGGTACGCATGGCTGGGGGCACTGGGCGGTGAATGCCTTCCGTACCAACGTCGACGACCTGATCGGCAACGATCCGCGTCCGGC GCCGGGGCGCCCCTGGGGGCAGCCGAACAACATCGACGAAGCGCGCATCCGTGGCGTCGAACTGGTCCTCGGCAGCCAGTGGCTGGGTTGGGACTGGAAC GCCAACGCGACCTTCCTCGACCCGCAAAACCGTTCCGGCGGCGTCAACGACGGCAACGAGCTGCCGCGCCGGGCGCGGCGGATGTTCAACCTGGAACTGG ACCGGCGCTTCGAGCGTCTTTCGCTGGGCGCCAGCGTGCACGCCGAAGGCCGACGCTATGATGATCCGGCCAACGAGGTGCGCCTGGGCGGCTACGCCAC CCTCGACCTGCGCAGCGAGTACCGGCTGAACGACGAATGGCGCCTGCAGGGCCGGATCGCCAACCTGTTCGGTGCCGACTACGAAACCGCGTATGGCTAC AACCAGCCTGGCCAGGCGGTCTACCTCAGCGTGCGCTACCAGGCCCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGCCGGGTATTTCGAATGAACGAGGCGACGGCGAGGCCGCGTCGCCGCAAGGAGTGATCGACGATGAACGAATCCCCCGAGAAGGACCAGCGCCACCGCG AGCGGATGGAGCGCAAGAAGGCCGTGATTGACGAGAAGATCGCCCAGGCCCGCGACGAACGTGGCGTGCTCCTGGTGCATAGCGGCAACGGCAAGGGCAA GAGCAGCTCGGCCTTCGGCATGGTCGCGCGGGCCCTGGGCCATGGCATGAAGGTCGGTGTCGTGCAGTTCATCAAGGGCGCCGCCAGCACCGGCGAGGAA GCCTTCTTCCGGCGCTTCCCCGAGGAAGTCAGCTACCACGTGATGGGCGAGGGCTTCACCTGGGAGACCCAGGACCGCCAGCGCGACATCGCCAAGGCCG AGGCAGCCTGGAAGGTCGCCGCGCAATTGCTGGCCGACCCGGACGTTGGCCTGGTGGTGCTGGACGAACTGAACATCGCCCTCAAGCACGGCTACCTGGA
Amino Acid Sequence
>ligand-gated channel protein
MNRVFLTPAAVALCGASSLSLAEPVSLADQVVTATRTAQTASQSLAAVSVIDREDIERSQARSVPELLRQVPGVSLANNGGFGKNTTLFLRGTESDHVLV LIDGIKVGSASAGLTAFQDLPVELIERIEVVRGPRSSLYGSEAIGGVIQIFTRRGDGQGAKPFFSAGYGTHQTLEGSAGVSGGAGNGWYSLGVSSFDTAG INTKRAGTAGYEPDRDGYRNLSGNLRGGYRFDNGLELDGTLLRAKSHNNYDQVFGNSGFNANADGEQNLVGGRARFTPFDPWLVTLQAGRSEDKADAYQD GRFYSRFDTRRDSLSWQNDLTLAEGHVLTLGYDWQKDEISSSEAFSVDSRLNKGWFAQYLGQYGRQDWQLSLRRDDNQQFGVHDTGSAAWGYALSDALRF TVSYGTAFKGPTFNELYYPDYGNPDLDAETSRSLEVGLSGTHGWGHWAVNAFRTNVDDLIGNDPRPAPGRPWGQPNNIDEARIRGVELVLGSQWLGWDWN ANATFLDPQNRSGGVNDGNELPRRARRMFNLELDRRFERLSLGASVHAEGRRYDDPANEVRLGGYATLDLRSEYRLNDEWRLQGRIANLFGADYETAYGY NQPGQAVYLSVRYQAL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site