Pseudomonas aeruginosa 3576, AJ63_00069
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3576 adVri-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTATCGGACCGTTGAACGTTACCTGCATCCAGGCGCCGGTATTCTTCGGCGATAGCCTCAGCGTGACCCTGCAGTGCGCGGAACCGGTGGACCTGGCCGC GGTGACGCGGGTCCTCGATGCGACGAAAGGTATCGAATGGGTCGGCGAGGGCGATTATCCGACGGTGGTCGGCGATGCCCTCGGCCAGGACGAGACCTAT GTCGGCCGGGTGAGGGCGGGGCAGGCTGATCCCTGTCAGGTCAATTTGTGGATTGTGTCTGATAATGTGCGAAAAGGTGCCGCGCTGAATGCCGTGCTCC TGGGTGAGTTGTTGATAAAACACTATCTGTAAAAGATACTTACCCACAGATTTGTAGAATTATTCGAGCTTGTTAATACTGGTTCGATCCGCTGCTGCCG GGGAGCGTCCGTCCATGCATGGCTGGGCGAGCGGACAGCAAGCACCGACGCACTCCCTCTCGTGAAACGAGAAAAGATATTAAAACCAAGGGATTACACT
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| DNA Sequence for Gene |
>AJ63_00069
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACTGGGGGAAATCACCCTGAAGT CGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTTCGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTT CAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGACCTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCG AAGCCGGTGCAGGAGCCCTACCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAATGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAGGCTCCGGTGCGTACCACCGC GCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGATCGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATG CTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCGTCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGC TGGAGCGCTCGCCGCGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGCCAGGCA GTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGGTGTCTGGCGAGGGCAAGGCCAGCAAG GGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCGGTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAAC TGCAGAGCCGCATGCAGGATCTGCAGAGCCAGCTGGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGG CGCCGAAGGCCAGGGCACAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACTCCCGCT GCGGCAGCACCGACTCCTGCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCCCGCGCCAGCTGCCGAGAAGCCTCCGG CACCTGCCGTTCCGGCGCCCGCTCCGGTTCAGGCGGCAGAGCAGCCGGCACCGAGCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGAT CGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTGCTGATGATCCTGTCGCGGCGTAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGAT GCCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGTCGCGCCGC AGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCCGAACTGTTGCAGAA CGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAAC GAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCG CCAAGCTGGCGCAGGACGAGCTGGATAGCTTCAGCCTCGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACAGGATCT CGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCGGGGTGCTGGACGACCTGACCCTGGAC AGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTCGACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAAC CCAAGCATGACGACCTGGGCGATTTCTCCCTGGATCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAGGTGCC CGCCGCGGCACCCGCCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGAC GAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCAACCTTG ACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCTCCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGG TGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAA GGTAACGACAGCCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGGAAATGAAGCGACCCTCATGAACGATGTTGTTCCGCCAGCGGCAGCCGAATCGGCTGCCGCTGGCGTTTCCAGAATCGCCCTCGGCATCGAGTACA AGGGCTCCCGCTATCGTGGCTGGCAGCGCCAGGAAGCCGGCGTGCCTTCCGTGCAGGAAGCGCTGGAGCGCGCCTTGTCGAAGGTTGCCGCCGAGCCGGT CGGGGTGATCTGCGCCGGCCGTACCGACGCTGCCGTTCATGCCAGCGGCCAGGTGGTGCATTTCGACACCGTGGTGGAGCGCCCGTTGAAAGCATGGGTG ATGGGCACCAACGCCAACCTGCCCGCGGATATCAGTGTGACCTGGGCGAGAGTGATGCCGGCGCATTTCCACGCGCGCTTCTCGGCCATGGCCCGGCGCT ATCGCTACGCCATCTACAACGATCCGATCCGCCCGGCGCACCTGGCCGAGGAGGTCACCTGGAACCATCGGCCGCTGGATATCGGGCGGATGCGCGAGGC
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| Amino Acid Sequence |
>peptigoglycan-binding protein LysM
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTDLKFTPVVKPNGKSVIRVTSS KPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAM LAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSPREALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASK GADKGGKGDSKAIADTLAVTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGTAQPNAALPDASQPNAAAQAPAQPGTPA AAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMILSRRNAQKEKEEAQAFAAD AGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRFNQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQEN ELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGVLDDLTLD SDLDLAASTAADKPVDDLDFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSLAD EPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARAYIDMGDSEGARDILDEVLAE GNDSQQAEARELLERLA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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