Pseudomonas aeruginosa 3575, AJ62_02490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3575 adTyh-supercont1.6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAACGCATTCGCCACAGACAACTCGTTGGCAACCAACCCTTGAAGCAGACGGATTACAATCAGGTTTCAAAGCATAATTCGTTTGCTTTCAAACAGAAT AGCCTCGCTCTCGAAGAGACCAACTGGAATACATAGGCGAAGCCATTTTCCAATTTGTGCACGGAGTTTGCTTATACCTCTTTCATCACAGTAAGAGGGG CCGTACGGAACATGACATTTTTATTACAAGGCCCCGCCAATCGGAAAAAGCGACTTGAGAAGCGACCTAAACAAGAGCGACCAACCCCGCGACATACGTC ATTTTTTCAACTGCGCACCTACGCAGATGCGACATGCGTCATGCAATTTTGCGACAGCACGGTAAAGAATCCGTCGCTTCGGAACCTCAACTATCGCCAA GAAACACTGCGTGCTATAAGTTAGCGCCGACAAGAAGAACTAGCCGTCACTGCGGCACTGTGATGGCAGAGATAATTTCAAAACCAAAGGAGCAATCACA
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| DNA Sequence for Gene |
>AJ62_02490
ATGAAAGTGATGAAGTGGAGCGCCATTGCACTGGCGGTTTCCGCAGGTAGCACTCAGTTCGCCGTGGCCGACGCATTCGTCAGCGATCAGGCCGAAGCGA AGGGGTTCATCGAAGACAGCAGCCTGAACCTGCTGCTCCGCAACTACTATTTCAACCGTGACGGCAAGGAAGGTCGGGGTGATCGCGTCGATTGGACCCA GGGCTTCCTCACCACCTACGAATCCGGCTTCACTCAAGGCACCGTGGGCTTCGGCGTCGATGCCTTCGGCTACCTGGGCCTGAAGCTCGACGGCACCTCC GACAAGACCGGCACCGGCAACCTGCCGGTGATGAACGACGGCAAGCCGCGCGATGACTACAGCCGCGCCGGCGGCGCCGTGAAGGTGCGCATCTCCAAGA CCATGCTGAAGTGGGGCGAGATGCAACCGACCGCCCCGGTCTTCGCCGCTGGCGGCAGCCGCCTGTTCCCGCAGACCGCGACCGGCTTCCAGCTGCAGAG CAGCGAATTCGAAGGGCTCGACCTCGAGGCAGGCCACTTCACCGAGGGCAAGGAGCCGACCACCGTCAAATCGCGCGGTGAGCTCTACGCCACCTACGCC GGCCAGACAGCCAAGAGCGCCGACTTCGCTGGCGGCCGCTACGCGATCACCGACAACCTCAGCGCCTCCCTCTATGGCGCAGAGCTGAAAGACATCTATC GCCAGTACTACCTGAACACCAACTACACCATCCCGCTGGCCTCCGATCAATCGCTGGGCTTCGACTTCAACATCTACCGCACCACCGACGAAGGCAAGTC CAAGGCTGGCGACATCAGCAACACCACCTGGTCCCTGGCGGGCGCGTATACCCTGGACGCCCACACCTTCACCCTGGCCTACCAGCAGGTGCATGGCGAC GAGCCGTTCGACTACATCGGCTTCGGCGGCAACGGTTCCGGCGCCGGCGGCGACTCGATCTTCCTCGCCAACTCCGTCCAGTACTCCGACTTCAACGGTC CTGGCGAGAAATCCTGGCAGGCCCGCTACGACCTGAACCTGGCCTCCTACGGCGTTCCTGGCCTGACCTTCATGCTGCGTTACATCAATGGTAAGGACAT CGACGGTACCAAGGTCGATTCCAGCTCCTCCTATGCAGGCCTGTACGGCGAGGATGGCAAGCACCACGAAACCAACCTCGAAGCCAAGTACGTGGTCCAG TCCGGTCCGGCCAAGGACCTGTCGTTCCGCATCCGCCAGGCCTGGCACCGTGCCAACGCCGACCAGGGCGAAGGCGACCAGAACGAGTTCCGCCTGATCG TCGACTATCCGCTGTCGATCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGACCGACAGGCAACGAAAAAACCCGGCATCGCCGGGTTTTTTCTTCTTGGCGGCAACGCGCCTATAAAGGAAGGGCGTAGGTACCGGTGACATGGGCC ACCAGGTCTTCCTCATTACTCTGCGAAAACACCCCGACCTCGCAGACGACCTGGCGCCGCCCCAGCTTGAGGATGCTCGCCTCGGCCAACAGGTCCTCGG GCCTGGGCTTGCTGAGGAAGTTGATGTTCAGGTTCGAGGTCACGGCCATCTCGACCGCCCCGAGACGCCCGAGAATGACCGCGTACATCGCCGCGTCGGC CAGCGCCATGATGGTCGGGCCGGACAGCGTTCCACCGGGACGCACCAGCTTGCCGTGAAAAGGTATGCGCGCCAGCGCATGTCGTTCGTCGAGACGCTCG ACACGAAAATCGATGTCCTCGGCCATGGGCAGCCCCATGCGGATCAACGCCTGTACCTGCGCCGCGTTCATTGCCTGCTGACTCCTCATCATCGATGGCC
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| Amino Acid Sequence |
>porin
MKVMKWSAIALAVSAGSTQFAVADAFVSDQAEAKGFIEDSSLNLLLRNYYFNRDGKEGRGDRVDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGTS DKTGTGNLPVMNDGKPRDDYSRAGGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGFQLQSSEFEGLDLEAGHFTEGKEPTTVKSRGELYATYA GQTAKSADFAGGRYAITDNLSASLYGAELKDIYRQYYLNTNYTIPLASDQSLGFDFNIYRTTDEGKSKAGDISNTTWSLAGAYTLDAHTFTLAYQQVHGD EPFDYIGFGGNGSGAGGDSIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMLRYINGKDIDGTKVDSSSSYAGLYGEDGKHHETNLEAKYVVQ SGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPLSIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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