Pseudomonas putida HB3267, B479_08110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida HB3267, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGAAGCTGTGTGTCGACGAGTTTCAGGAATTGGGCTTCGAGCTGAACCTGGAATTCAAGGAAGATCTGGATGACCAGGCAATCGATGCTTTCCTCGACGC GTTCCTGGCAGAAGCCATGGACGCCAATGGCCTGGACTATGTAGGCGGTGACGATTTCGGCCTGGTGTGCTCGGTCAAACGCGGCTCGGTCAGCGAAGAA CAGCGTGCAGCCGTTGAAGCCTGGCTCAAAGGCCGTAGCGAACTGACCAAGATCGAGGTCAGCCCGCTGCTGGACGCCTGGTACCCGGAAAAGCCGATCA ACAAGGCCGAGTAATACCGGCCCGGCTCGATCGCTGAAAAGGCTACCCTCAGGGGTGGCCTTTTTTATTGGGGGTGCTTTTCCGTCGAACGTGGCGCATC GTCGCTGCGCTTGGGGCATAATGCGTATTCTTTCACCCTGGGGCCATCATTCCTTACAGCCCCAATGCCCTTTTCCCTCGCCGTAGGGTATTTATCGATC
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| DNA Sequence for Gene |
>B479_08110
ATGATCAAAACGCTTCGTCCCCTCGTTCTTGCCGGCCTGCTGTTGCCACTCGCCCTGCCCAGCCAGGCCGCCGCCGTCAACACCACGCTGCCTGCCAAGG TGCAGCAGGCCCTCAAGGCCAACAAGCTGCAGGATTCTGCCCTGTCGCTGGTGATGCTGCCGCTTGACGGCCCCGGCACACCGACCATGTTCAATGCCGA TGTCTCGGTCAACCCGGCCTCGACCATGAAGCTGGTCACCACCTACGCCGCCCTCGAATTGCTCGGCCCGACCTTCCAGTGGAAAACCGAGTTCTACACC GACGGCACCCTGAGCAACGGTGTACTCAACGGTAACCTGTACCTCAAAGGTGGCGGCGACCCGAAACTGAACATGGAAAAGCTGTGGCTGCTGATGCGTG ACCTGCGCGCCAATGGCGTGCGCACCATCACCGGCGACCTGGTGCTGGACCGCAGCCACTTCGTGCAGCCCAACCTGCCGCAGTTCAACGACGACGGTGG CGATGAGAACAAGCCGTTCCTGGTCAAGCCCGACTCGCTGCTGGTCAACCTCAAGGCCCTGCGTTTCGTGGCCCGCAACGATGGCGGCAAGGTCACCATC GCGGTCGAACCGCCGATTGCCAGCATCCGTATCGACAACCAGGTCAAGGCGGTGGCCTCCAAACAGTGCTCGGGTGACGTGCGCTACAACCCGGTGCAGC AGGCCGATGGCATCAGCGTAACGGTCAGTGGCCAGCTGGGTGACGGCTGCAACTCGCAGACCTACCTGTCGCTGCTCGACCACCAAACCTACGCCGCCGG TGCCGTGCGCGCGATCTGGAACGAGCTGGGTGGCAGCATCCAGGGTGGCGACCGCTTCGAGAACGTGCCCAAGGGCGCTCGCCTGCTGGCCCGTGCCTTC TCGCCAGACCTGGTGGAAGTGATCCGCGACATCAACAAGTACAGCAACAACACCATGGCCCAGCAGCTGTTCCTGAGCCTTGGCGCGCAGTTCCGCACCG ATGCCGACGGTGACGACGCCCGCGCCGCCCAGCGCGTGGTGCGCCAGTGGCTGGCGAAGAAGGGCATTACCGCGCCGCACCTGGTGATGGAAAACGGTTC CGGCCTGTCGCGTGCCGAACGGGTCAGCACCCGGGAGATGGCCGCGATGCTGCAGGCTGCCTGGAAGAGCCCTTATGCTGCCGAGTTCATGAGCTCGATG CCGCTGGTGGGTATGGATGGCACCATGCGCAAGCGCCTGAAGCGTACCGCCATGACCGGCGAAGGGCACATCAAGACTGGCACGCTGAATACCGTGCGGG CAATTGCCGGCTTCAGCCGCGACAGCAACGGCCATACCTGGGCGGTGGCGGCGATCCTCAACGATCCGAAACCGTGGGGCGCCTCGCAGGTGCTCGACCA GGTGCTGCTGGACCTGTACCGCCAGCCGAAACTGGCCGGCAGCACTGCGGCCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGGTACAGGCAGCCAGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTGCACCAAGTTCAATAACGGTGCAGTACCTGTGGGAGCGGGCAA GCCCGCGAAGAGGCCGGCACCGACAACCAAAAACGATCAGGCCAACTCCCCCTCTACCCGGTCACGCCCGGCCTGCTTGGCCGCATACACGCCTGCATCG GCCCGCAACAGCAAGGCATCGGCCCCTTCCCCCGGTCGCCAACCCGCCACACCAAAACTCGCGGTCACCCTGCCCACGCCTTCCACTGGCACATTGCGCA CCCCATGCCACAGTTCCAGCGCCAGCAGCCGCGCTTGCTCGGCATCGCTCCCCGGGCACAGCACCATGAATTCCTCGCCGCCCAACCGGCAGAAAACATC GGTACGGCGCAAACGCTGGCTGATACGCAGGCACAGGCTGCGCAGCACGCGATCGCCGACAGCATGGCCAAAATGGTCGTTGATGCGCTTGAAGTGATCG
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| Amino Acid Sequence |
>D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MIKTLRPLVLAGLLLPLALPSQAAAVNTTLPAKVQQALKANKLQDSALSLVMLPLDGPGTPTMFNADVSVNPASTMKLVTTYAALELLGPTFQWKTEFYT DGTLSNGVLNGNLYLKGGGDPKLNMEKLWLLMRDLRANGVRTITGDLVLDRSHFVQPNLPQFNDDGGDENKPFLVKPDSLLVNLKALRFVARNDGGKVTI AVEPPIASIRIDNQVKAVASKQCSGDVRYNPVQQADGISVTVSGQLGDGCNSQTYLSLLDHQTYAAGAVRAIWNELGGSIQGGDRFENVPKGARLLARAF SPDLVEVIRDINKYSNNTMAQQLFLSLGAQFRTDADGDDARAAQRVVRQWLAKKGITAPHLVMENGSGLSRAERVSTREMAAMLQAAWKSPYAAEFMSSM PLVGMDGTMRKRLKRTAMTGEGHIKTGTLNTVRAIAGFSRDSNGHTWAVAAILNDPKPWGASQVLDQVLLDLYRQPKLAGSTAAN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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