Pseudomonas aeruginosa 3573, AJ60_02973
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3573 adTvP-supercont1.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCAGATGATCACCTGGCCCAGCCGCGAATCGGCGTACTCCTCCAGCCAGCGGGCCTGGGCGCGCTGGCCGATGTCGGCGGGATACAGGCTCGGCTGCG GGTAGCGCTCCTCCAGGTACTGGCAGATCACGCTGGAATCGTTGAGGACGAAGTCACCGTCCACCAGCACCGGAATCTGGCGCAACGGACTGAGGCGCTC GAAGGCCTCGTCGCCGAAGAACGGCACGATGGGGTCGATGCGGTAGGCGATGCCTTTCAGTTCCAGCAGCACCAGCACCTTGCGCACATAGGGGGACAGA TAGGAACCGATGATCAGCAAAGGTTCGGCCACGGCGAGACTCCTGTTCTTGTTATGGGAACGCCGATCCTCCGGCAAACCGGTGGGACGACTCAAGTGGC TTCCCGACGGACGCCAATTGCAGGGATAGTCGCACTTTGCGATCATTTGCGAATAATTCTCGTTTTTCCATTCAATCCCGTTTCGGGATGGGGAGCGGCC
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| DNA Sequence for Gene |
>AJ60_02973
GTGTCGGCGGGTGACGTCAGCAACAGCGAATTCGTGGGTAGCCTGTACCGGGACCACCGCGGCTGGCTGCTTGCCTGGCTGAACCGCAACCTCGGCTGCC GCCAGCGCGCCGAAGACCTCAGCCAGGACACCTTCGTTCGCCTCCTCGGCCGCCCGGAGCTGCCCGGCCTGCGCGAACCGCGCGCGTTCCTGGCGAAGGT GGCGCGCGGCCTGATGATCGACCACTTCCGCCGCGCCGCCCTTGAGCAGGCCTATCTCGCCGAACTGGCGCTGGTTCCGGAAGCGGAGCAGCCTTCGGCC GAAGAGCAGTACCTGATTCTCGAGGACCTCCGCGAGATCGATCGCCTGCTTGGCACGCTGTCGCTGAAGGCGCGCAGCGCGTTTCTCTATAGCCGCCTGG ACGGCATGCCCCACGCGGAGATCGCCGAGCGTCTCGGAGTCTCGGTGCCGCGCGTGCGCCAATACCTGGCCCAGGGTCTGCGCCAGTGCTACATCGCCCT CTACGGAGAGCCCCGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCCGACGATCGTCATTCGCCGGTACGCGCGCGGGTGCTCGACGAAGCCATCGCCTGGCAATTGCTGCTCGACTCCGGCGAAGCCCATCCCGACGATCA CCGCGCCTTCCACCGCTGGTACGCGGCGCATCCCGAACACGAACGCGCCTGGGAACAGCTCGGCGGCCTCGACCGGCACCTGGCGAGAGCCGCCAACGGG CCGGCACGCAACGCCCTGCTGTCCGGCAACGCACGCTTCAAGCGCCGCCTGCGCCGGCTCGGCAGCAGCGCCCTGGGGCTAGTGCTGGCGCTGGGCGTCG GGCTCGGCGTGGCCAACCGCTACGTCCCGGTCCGCTACCTGCTGGCCGACGCCTACAGCGCTACCGGCGAGCAGCGCGAGCTGACCCTCCCGGATGCCAC CCATGTGCGCCTGAACAGCCGCAGCGCCATCGACGTCCGCTTCGACGGCGAACGCCGCCAGGTCGTGCTACTGGCCGGCGAGATCCTGGTGGAAACCGCC
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| Amino Acid Sequence |
>RNA polymerase sigma factor
MSAGDVSNSEFVGSLYRDHRGWLLAWLNRNLGCRQRAEDLSQDTFVRLLGRPELPGLREPRAFLAKVARGLMIDHFRRAALEQAYLAELALVPEAEQPSA EEQYLILEDLREIDRLLGTLSLKARSAFLYSRLDGMPHAEIAERLGVSVPRVRQYLAQGLRQCYIALYGEPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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