Pseudomonas aeruginosa 3573, AJ60_00911 (algL)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3573 adTvP-supercont1.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGAATTCCACAAGAACCCGCCGAAGATCCTCATCTGGGAATTCGCCACCCACTACGACATGGCGCAGAAGAGCTTCTACCGCCAGGCCATGCCGCTGGT GGACAACGGCTGCTCCGGCCGGAAGACCGTACTCAGCCGCAAGGTCAAGCTGCGCCAGGGCCGCAACGAGGTGCTGCTGAACAGCGCCGCGCTACCGATC CGTAGCGGCAGCTACGTCGCCGACGTGACCTACAGCGACCCTTCGGTACACGAGTTGAAGAACACCATCTGGTACATGAACGGCCGCCGCGAGCAGTTGA AGATCGAGCAGTCGAAAGCCGTCGATACCGGCGGCCGCTACGTCTTCCAACTGCGCAACGACAGCGACTGGGCCGACCAGCAGTTCCTTTCCCTGGAAAT CGAAGCGCCGGAGGACATGCCCCAGGGCCTGGAGGTCCAGGCCAGCATCTGCCAGGCGGCGCCCGCCAAGGCCAGCCAGTCGGTGGCCGGGAGGTAAACG
|
|
| DNA Sequence for Gene |
>AJ60_00911
|algL
ATGAAAACGTCCCACCTGATCCGTATCGCCCTGCCCGGTGCCCTCGCCGCGGCATTGCTCGCCAGCCAGGTCAGCCAGGCCGCCGACCTGGTACCCCCGC CCGGCTACTACGCGGCGGTCGGCGAGCGCAAGGGCAGCGCCGGCAGTTGCCCCGCGGTGCCGCCGCCGTATACCGGCAGCCTGGTCTTCACCAGCAAGTA CGAAGGCTCCGATTCGGCGCGGGCGACCCTCAACGTCAAGGCGGAGAAGACCTTCCGCTCGCAGATCAAGGACATCACCGACATGGAGCGCGGCGCCACC AAGCTGGTCACCCAGTACATGCGCAGCGGCCGCGACGGCGACCTGGCCTGCGCACTGAACTGGATGAGCGCCTGGGCCCGCGCCGGCGCCCTGCAGAGCG ACGACTTCAACCACACCGGCAAGTCCATGCGCAAATGGGCGCTGGGCAGCCTCTCCGGCGCCTACATGCGCCTGAAGTTCTCCAGCTCGCGGCCGCTCGC GGCCCACGCCGAGCAGAGCCGGGAAATCGAGGACTGGTTCGCCCGGCTCGGCACCCAGGTAGTCCGCGACTGGAGCGGCCTGCCGCTGAAGAAGATCAAC AACCATTCCTACTGGGCGGCCTGGTCGGTGATGTCCACCGCGGTGGTGACCAACCGCCGCGACCTCTTCGACTGGGCGGTGAGCGAGTTCAAGGTCGCCG CCAACCAGGTCGACGAGCAGGGCTTCCTGCCCAACGAACTCAAGCGCCGCCAGCGCGCCCTCGCCTACCACAACTATGCGCTGCCACCGCTGGCGATGAT CGCCGCGTTCGCCCAGGTCAACGGCGTCGACCTGCGCCAGGAGAACCACGGCGCCCTGCAGCGCCTGGCCGAGCGGGTGATGAAGGGAGTCGACGACGAG GAAACCTTCGAGGAGAAGACCGGCGAGGACCAGGACATGACCGACCTCAAGGTCGACAACAAGTACGCCTGGCTGGAGCCCTACTGCGCCCTCTACCGCT GCGAGCCGAAGATGCTCGAGGCGAAGAAGGACCGCGAGCCGTTCAACAGTTTCCGCCTCGGCGGCGAAGTGACGCGGGTGTTCAGCCGCGAAGGGGGAAG TTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGGCGTGGCGGGAAGCGGGCGCACAGGCCGGGGGCCACGCGCCCCTCTGCCCCGCTCGCCGACCAGGCGCCACACCCCGACCCATGCGCGACAGACGCGG GCGGGCGCAACACCTTAGGCAACACCACGGGGAGGAAAACGGCGGGTCGTCCCGCCTTTCCTCGAGCGCTCCAGGGCGCGGAAAGGCAGGGCCGACCTGA ATGGTTGACGCTCTAGAGAGAGAGACGGCATGGTCTTTTCTTCAAACGTGTTCCTGTTCCTGTTCCTGCCGGTCTTTCTCGGCCTGTACTACCTGAGCGG CGAACGTTACCGGAACCTGCTGCTGCTGATCGCCAGCTACGTGTTCTACGCCTGGTGGCGGGTGGACTTCCTCCTGCTGTTCGCCGGGGTCACCGTCTTC AACTACTGGATCGGCCTGCGCATCGGCGCCGCCGGCGTACGCACCAGGGCCGCGCAACGCTGGCTGATCCTCGGCGTGGTGGTCGACCTCTGCGTGCTCG
|
|
| Amino Acid Sequence |
>poly(beta-D-mannuronate) lyase
MKTSHLIRIALPGALAAALLASQVSQAADLVPPPGYYAAVGERKGSAGSCPAVPPPYTGSLVFTSKYEGSDSARATLNVKAEKTFRSQIKDITDMERGAT KLVTQYMRSGRDGDLACALNWMSAWARAGALQSDDFNHTGKSMRKWALGSLSGAYMRLKFSSSRPLAAHAEQSREIEDWFARLGTQVVRDWSGLPLKKIN NHSYWAAWSVMSTAVVTNRRDLFDWAVSEFKVAANQVDEQGFLPNELKRRQRALAYHNYALPPLAMIAAFAQVNGVDLRQENHGALQRLAERVMKGVDDE ETFEEKTGEDQDMTDLKVDNKYAWLEPYCALYRCEPKMLEAKKDREPFNSFRLGGEVTRVFSREGGS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|