Pseudomonas aeruginosa PAO1-GFP, V563_04883
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1-GFP adTym-supercont1.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGTCCCGAGGAGTACCCGGTGTACAACCACGACGACCTGGCCGCCAGCTTCGCCCCGGTGATGCTCGCCCTGCGCCAGGCGCTGGCGACGGTGATCGA CGCCAAGGCGATCGCCATCCCGATCGTCGAGAAGGCCTACGGCGTGCACGTCGCGATGCTCAGCGACCGCAGCCTGATCGACAACGCCAGCTTCGTCCTG GTGGTGCGCGCCGACGTCCCCGGCGAGAGCCTGCGCGGGCACTTCCCGCAGCAGGCCAAGGTCGGCTCGGTGGAGCACATCCGCGACCTGGTCAACCTGC AACTGCCGGGTATCGGCCTGCTGCCGATGCCGGTGGCGCCGCGGCAGATCCCCTACCACGCCGGCTCCACCTATTTCGAACTGGACCGCGGCAGCGCGCA TTGGAAGCAGCTGACGCACTCCGGCGGCTTCGCCTTCCACATCGCCGGCCAGTTCCCCGGGCTGAACCTGGCCTTCTGGGCCATTCGAGGATAAGCAACG
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| DNA Sequence for Gene |
>V563_04883
ATGCCTCCCATCGACGATCCCTTCGGCACCCCGGCCGGCGGCGGCAACGGAAGCCCGCCCGACGACCGCACCATGATCATGCCGCGTCCCGGCGGCCGCG CCCCGGAACCGGCCGGCGGCCCCCGCGGCGGCGATCCCTACACGCCGCCGCCGATGGCCAGCCTGGCGCCGCTGAGCGGCCGCGGCGACGGCCTCAACCC GCTGGAGCAGGCCGCCGGCCCACTGCTGGCGATGCTCACCCGCCTGCGCAACACCATCGCCCATCCGGCGCCGGCCAGCCTGCGCGCGCAACTGCTCGGC TACCTGCGCCAGTTCGAGGAGAAGGCACGCCAGGCCGGCGTGGCGCCGGACGAAGTGATGCTGGCGCGCTACGTGCTCTGCACCGCCCTCGACGAAGCGG TGCTCAGCACGCCGTGGGGCAGCACCAGCGACTGGGGCAAGCAGAGCCTGCTGATCACCCTGCACAACGAGGCCTGGGGCGGCGAGAAGGTCTTCCAGTT GCTCGAACACTGCCTGCAGAACCCGCACCAGCGCCTGCACCTGCTGGAGCTGCTGTACCTGTGCACCAGCCTCGGCTTCGAAGGCCGCTACCGGGTCATG CACGACGGCCGCAGCCAACTGGAGGCGCTGCGCGAGCGCACCGCGGCGGTGATCCGCAGCACCCGCGGCGAGTACGAGCACGAACTGTCGCCGCACTGGC GCGGCCTCAGCGTGATGCGCGACCGCCTTTCGCAATACCTGCCGCCGTGGGTCGGTATCGCCATCGGCCTGGCCTTGCTGCTGGCCTTGCTGTTCGGCCT GCGGATGAAGCTGGCCGCCGACGCCGAGCCGGTGTTCAAGCGCATCCACGCCATCGGCGAGATCCCGGTGCAGGCCATCGACCGCCCGGCGGTGCAGCCG CGGGTGATCGAGCGGCCACGCCTGGCGCGCTTCCTCGCCGACGACATCAAGGCCCAGCGAGTGGCGGTGGAGGACGCCGTCGACCGCTCGGTGGTGACCA TCCGCGGCGACGAGCTGTTCGCCAGCGCCAGCGCCAGCGTGCGCGACGAGTTCCAGCCGCTGCTGCTGCGCATCGCCGACGCCCTGCGCAAGGTCAAGGG CCAGGTGCTGGTCACCGGCCATAGCGACAACCGGCCGATCGCCACGCTGCGCTACCCGTCCAACTGGAAACTGTCCCAGGCCCGCGCCCAGGAGGTCGCC GACCTGCTCGGCGCGACCACCGGCGACGCCGGCCGCTTCACCGCCGAAGGGCGCAGCGACACCGAGCCGGTGGCGACCAATGCCAGCGCCGAAGGCCGCG CACGCAACCGCCGGGTGGAAATCACCGTATTCGCGGAGGGCGCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGCTTCCTCAACTTCTTCGCGCGCTGGGTGGTGCCGGTGCTCGGCCTGCTCGCCCTGAGCCTGATCATCTGGTTCCTCGGCCCGCTGCTGCGCCTGGG CAACTACGAACCGTTGGCCTCGGCGACCAGCCGCTGGGTGCTGATCGTCCTGCTGTTCCTGGTCTGGATCGGCTTCCGCGTGCTGCGCATCGTGCAGGCC CGGCGCAACGCGGCGAAGGTCATGCAGAGTCTCGCCGAGGTCAGCGCGCCGGACGCCGCCAGCGTCGCCACCGCCGAAGAGCTGGCGACCCTCAAGCAAC GCATGGACGAGGCCCTGGCCCTGCTCAAGCGGGCCAAGTTGGGCGGCAGCGAGCGGCGCAACCTGTACGAGTTGCCCTGGTACGTGATCATCGGCCCGCC CGGTTCGGGCAAGACCACCGCGCTGATGAATTCCGGCCTCGACTTCCCGCTCGCCGCGCAGATGGGCGCCGGGGCGATCCGCGGGGTCGGCGGCACGCGC
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| Amino Acid Sequence |
>type VI secretion protein
MPPIDDPFGTPAGGGNGSPPDDRTMIMPRPGGRAPEPAGGPRGGDPYTPPPMASLAPLSGRGDGLNPLEQAAGPLLAMLTRLRNTIAHPAPASLRAQLLG YLRQFEEKARQAGVAPDEVMLARYVLCTALDEAVLSTPWGSTSDWGKQSLLITLHNEAWGGEKVFQLLEHCLQNPHQRLHLLELLYLCTSLGFEGRYRVM HDGRSQLEALRERTAAVIRSTRGEYEHELSPHWRGLSVMRDRLSQYLPPWVGIAIGLALLLALLFGLRMKLAADAEPVFKRIHAIGEIPVQAIDRPAVQP RVIERPRLARFLADDIKAQRVAVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRKVKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVA DLLGATTGDAGRFTAEGRSDTEPVATNASAEGRARNRRVEITVFAEGAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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