Pseudomonas aeruginosa PAO1-GFP, V563_01052 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1-GFP adTym-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACGCAGGACGAAGATCACGTACTTGATGGAAACGACCCAGACCAGCGACCAGAAGATCAGCGACAGCACGCCAAGGACGCCATCGTGGTTGGCCTGCA CCCCGTAGCCGCCGATGAAGACCTCTTTCAGGGTATACAAGGGACTGGTGCCAATATCCCCATAGCAGACTCCAACCGCCCCGACCATCAGGCCGATGGC AGAGCTGGAATGCCCCTCCGAAGTCTCCTCGGCACGCGTCGCTGCATCACTCATGAAACGCTTTCCCCCGGAAAAATTCGGCAAATGCTGCGCCCATGCC GTCCGCGATGCAAGCGCCGAGGCCACGGACTGCTATGACTATAGAAGGCCGGGGAGCCGATTGCCGAGCGCCCGCGGTGAGTTTTTCCAGGGCCGGAAAA GAGCTGCACGGGAGACTGGAAAAGCCGCGGCGCTGCCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCAGCAAGCGCGCCCGCCTACCGAGGTTAGCC
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| DNA Sequence for Gene |
>V563_01052
|rimO
ATGTCCACCCCCACTCCCAAAGTCGGCTTCGTCAGTCTTGGATGCCCCAAGGCGCTGGTCGACTCCGAGCGCATCCTCACCCAGCTGCGCATGGAAGGCT ATGAGGTCGTTCCGACCTACGAAGACGCCGACGTCGTGGTGGTCAACACCTGCGGTTTCATCGACAGCGCCAAGGCCGAGTCCCTGGAAGTGATCGGCGA AGCCATCGCCGAGAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAGCACGCGATCCGCGACGTGCATCCAAGCGTGCTGGCGGTCACCGGC CCGCAACAGTACGAGCAGGTGGTTACCGCGGTGCACGAAGTGGTGCCGCCGAAGACCGAACACAACCCGCTGGTCGACCTGGTCCCGCCGCAAGGCGTCA AGCTGACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGTTGCAGCTTCTGCATCATCCCGTCCATGCGCGGCAAGCTGGTCAG CCGGCCGGTCGGCGACGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTCAAGGAACTCCTGGTGATTTCCCAGGACACCAGCGCCTACGGCGTG GACCTGAAGTACAAGACCGACTTCTGGAACGGCCAGCCGGTCAAGACCCGCATGAAGGAACTCTGCGAGGCGCTGAGCAGCATGGGCGTGTGGGTTCGCC TGCACTACGTCTACCCGTACCCCAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGCTCCTGCCGTACCTCGACATCCCCTTCCAGCATGCCAG CCCGAAGGTGCTCAAGGCCATGAAGCGCCCGGCCTTCGAGGACAAGACCCTGGCCCGGATCAAGCAGTGGCGCGAGATCTGCCCGGAACTGACCATCCGC TCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAAGAAGACTTCCAGTACCTGCTCGACTGGCTGACGGAAGCCCAGCTCGACCGCGTCGGCTGCTTCC AGTACTCCCCCGTCGAAGGCGCTCCGGCCAACGAGCTGGGCCTGGAGCCGGTGCCGGACGAGGTCAAGCAGGACCGCTGGGAACGCTTCATGGCCCACCA GCAGGCGATTTCCGCCGCTCGCCTGCAGCTCAAGGTGGGCAAGGAAATCGAAGTGCTGATCGACGAAGTCGACGAACAGGGCGCGGTCGGCCGCTCCTGG GCCGACGCTCCGGAAATCGACGGCAACGTGTTCGTCGACAGCGACGAGCTGAAGCCGGGCGACAAGGTCCGCGTGCGCATCACCGATGCCGACGAGTACG ACCTCTGGGCCGAGCTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCCCTGAAGAGCCCCGCCCCGCGGGGCTTTTTCATCGCCAACCGTTCCGGAGAGCACGATGCTCAACAACGACGTACTACGCAGCCTGCGCTACCTG CTGGATCTTCCCGACGCACATCTGGCCGAACTGGCCGCCCGGTTCGGCGAGCAAGTCGAAGCGGACCTGCTCGAGGCTTACCTGAAGAAGGAAGACGAAG ACGGCTTCCAGGCCTGCCCCGACCGCTACCTGGCGCGCTGCCTGGACGGACTGATCATCCAGCGCCGCGGTCGCGACGAGTCGCGTCCGCTACCGCCGCT GGAGCTGCCGTTGAGCAACAACATGATCCTGAAGAAGCTGCGGGTCGCCTTCGAACTCAAGGAGGAAGACCTCCATGCCATCCTCGACAGCGTCGACTTC CCGGTCTCCAAACCCGAGCTGAGCGCCCTGTTTCGCAAGCCCGGCCACAGCAACTACCGGACCTGCGGCGACCAGTTGCTGCGCAACTTCCTCAAGGGCC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTPTPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIAENGKVIVTGCMGVEEHAIRDVHPSVLAVTG PQQYEQVVTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGV DLKYKTDFWNGQPVKTRMKELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKQWREICPELTIR STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAVGRSW ADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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