Pseudomonas aeruginosa BWH060, V561_04334
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH060 adTvY-supercont1.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCCTTTTAAAACACGGGAAGCGATTCCCGGCCTGTTCACTCAGAGGAAGCCCATCATGGCACTGAGCGTTGAAGAAAAAGCGCAGATCGTTAACGAAT ACAAGCAAGCTGAAGGCGACACCGGTTCCCCGGAAGTGCAGGTAGCCCTGCTGTCCGCCAACATCAACAAGCTGCAGGATCACTTCAAGGCCAACGGCAA GGATCACCATTCCCGCCGTGGTCTGATCCGTATGGTTAACCAGCGCCGTAAGCTGCTGGACTACCTGAAGGGCAAAGACGTGTCTCGCTACACTGCCCTG ATCGGCCGTCTGGGTCTGCGTCGCTAAGCGACGCCGGTCGGCAGCTTGAAGCAAGGAGCTGGAAGTCTGGCGTCGATACCCGCACACGAGGCGGGTATCG GCGTCGGGCTTCCAGCTTCGCGCTTTCTAGGAATCGATTCGGGTCCGACTCCCGGCATTCCAACGATTTCCCCCAAGGCAACATAGAAGGTAAAGACACC
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| DNA Sequence for Gene |
>V561_04334
GTGAACCCGGTAACCAAGCAATTCCAGTTCGGTCAGTCGACCGTCACTCTCGAGACCGGCCGTATCGCTCGCCAGGCCACCGGCGCCGTACTGGTCACCA TGGACGACGTCAGCGTGCTGGTCACCGTGGTCGGCGCCAAGTCGCCGGCCGAAGGCCGCGACTTCTTCCCGCTGTCCGTGCACTACCAGGAAAAGACCTA CGCCGCAGGCCGTATCCCCGGCGGTTTCTTCAAGCGTGAAGGACGTCCTTCCGAGAAGGAGACCCTGACCTCGCGCCTGATCGACCGTCCGATCCGTCCG CTGTTCCCCGAAGGTTTCATGAATGAAGTGCAGGTCGTCTGCACCGTCGTTTCCACCAACAAGAAGTCCGATCCGGACATCGCCGCGATGATCGGTACCT CCGCCGCCCTGGCGATCTCCGGCATTCCGTTCGCCGGCCCGATCGGCGCCGCCCGCGTCGGTTTCCATCCGGAAATCGGCTACATCCTCAACCCCACCTA CGAGCAACTGCAGAGTTCCAGCCTCGACATGGTCGTGGCCGGTACCGAAGACGCCGTGCTGATGGTGGAGTCCGAGGCCGACGAACTGACCGAAGACCAG ATGCTCGGTGCCGTGCTGTTCGCCCACGACGAGTTCCAGGCGGTGATCCGTGCCGTCAAGGAGCTGGCCGCCGAAGCTGGCAAGCCGGCCTGGGACTGGA AAGCCCCGGCGGAAAACACCGTGCTGGTCAACGCCATCAAGGCAGAGCTGGGCGAAGCGATCTCCCAGGCCTATACCATCACCATCAAGCAGGACCGCTA CAACCGTCTGGGCGAGCTGCGCGACCAGGCCGTGGCCCTGTTCGCCGGCGAGGAAGAGGGCAAGTTCCCGGCTTCCGAGGTCAAGGACGTATTCGGCCTG CTGGAATACCGCACCGTTCGCGAGAACATCGTCAACGGCAAGCCGCGTATCGACGGTCGTGACACCCGTACCGTGCGTCCGCTGCGCATCGAAGTCGGCG TGCTCGGCAAGACCCACGGTTCCGCGCTGTTCACCCGTGGCGAAACCCAGGCCCTGGTCGTTGCGACCCTCGGCACCGCGCGCGATGCCCAGTTGCTGGA TACCCTGGAAGGCGAGCGCAAGGACGCCTTCATGCTGCACTACAACTTCCCGCCCTTCTCGGTAGGCGAGTGCGGCCGCATGGGCAGCCCGGGTCGTCGT GAAATCGGCCATGGCCGTCTGGCCCGTCGTGGCGTCGCTGCCATGCTGCCGACCCAGGACGAGTTCCCCTACACCATTCGCGTGGTTTCCGAGATCACCG AGTCCAACGGTTCCAGCTCGATGGCCTCCGTGTGCGGCGCCTCCCTGGCGCTGATGGATGCCGGTGTGCCGGTCAAGGCGCCGGTCGCCGGTATCGCCAT GGGTCTGGTCAAGGAAGGCGAGAAGTTCGCCGTCCTGACCGACATCCTCGGTGATGAAGACCACCTGGGCGACATGGACTTCAAGGTTGCCGGTACCGAC AAGGGTGTCACCGCCCTGCAGATGGACATCAAGATCAACGGTATCACCGAAGAGATCATGGAGATCGCCCTGGGCCAGGCCCTGGAAGCTCGCCTGAACA TCCTCGGCCAGATGAACCAGGTCATCGCCAAGCCGCGCGCCGAGCTGTCCGAGAACGCCCCGACCATGCTGCAGATGAAGATCGACTCGGACAAGATCCG CGACGTCATCGGCAAGGGCGGCGCGACCATCCGTGGTATCTGCGAAGAGACCAAGGCCTCGATCGACATCGAGGACGATGGCAGCGTGAAGATCTACGGC GAAACCAAGGAAGCCGCCGAGGCCGCCAAGCTGCGCGTCCTGGCGATCACCGCGGAAGCCGAGATCGGCAAGATCTACGTCGGCAAGGTGGAGCGCATCG TCGACTTCGGTGCCTTCGTCAACATCCTGCCGGGCAAGGACGGCCTGGTGCACATCTCGCAGATCAGCGACAAGCGCATCGACAAGGTCACCGACGTGCT GCAGGAAGGCCAGGAAGTGAAGGTCCTGGTGCTCGACGTGGACAACCGTGGCCGCATTAAGCTGTCGATCAAGGACGTGGCTGCCGCCGAAGCTTCCGGC GTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGAGTCGTGATCGATGAAAACAGGGCCCTCGGGCCCTGTTTTCGTTTCCGCGACACGCTTCTCGGCGAAGGGGGCGAATCCTTGCATTTTGCAAGCCC TGTCATCGCCAATTCGGCATTCTGCAACCGTCTCGCTTCCAGCTTATTTTTTAACTTATTGTTTTTAAAGGATTTTATTTTAGAGGAAAACTGGCACAGC GCTTGCGATATCTACTATGCAACTGACGCCAGGAATGGCTGCAGTTTTTCGAAATCCATAGGAGAAACCGCAATGAAATTCAGCAAACTCGCTATTGCCG CTGCTACTGCCACTGCTCTGAGCTTCTCGATGGCCAATGCGTTCGCTGCCCAGCCCATCAGCCTGGCGGCCAACGACACTATGCAGAAAACCGAAGAAGC GGTTTCCGATACCTGGATCACCAGCAAGGTGAAATCCAGCCTGATCGCCAACAAGAATGTCAGTGGCGTCGATATCAAGGTCGAGACCAACAAAGGTGTG
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRP LFPEGFMNEVQVVCTVVSTNKKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVAGTEDAVLMVESEADELTEDQ MLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENTVLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKDVFGL LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRR EIGHGRLARRGVAAMLPTQDEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTD KGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIYG ETKEAAEAAKLRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRIDKVTDVLQEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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