Pseudomonas aeruginosa BWH059, V560_02931
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH059 adTvw-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCAACGTCACCTTCAAGCCCGCCACTGGCGGTGCCCAGGAAGAAATCGAACTGCCGTTGAAGCTACTGGCGATCGGCGATTACACCCAGCGCACGGAT GAGCGCAAGGTGGAGGACCGCAAGCCGATCGGCATCGACAAGATGACCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGGGGCTGACGCTGAGCGTACCCA ATCGTCTCCAGGAGGAGGGCGGCAGCGACGAGCTGGCGGTGGGGCTGCAGATCAACTCGATGAAGGACTTCAACCCGGCCAGCATCGTCGAGCAGGTGCC CGAGCTGAAGAAGCTGATGGAGTTGCGCGATGCGTTGGTGGCCCTCAAGGGCCCGCTGGGCAACGCCCCGGCGTTCCGCAAGGCCATCGAAAGCGTACTC GCCGACGACGAGTCCCGTAGCCGTGTGCTGGGCGAGCTGGGGCTGAGCGCCGCCCCCTCCCAGGACGCCTGAGCCACCCCCTAGCCAAGGAAGCAGATAC
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| DNA Sequence for Gene |
>V560_02931
ATGAGCACCAGTGCCGCACAGCAAGGCCGGAACCAGAACGGCGAATACAACATTCTCGACAGCATCATCGCCGAGACCCGCCTGAGCCCGGACGACGAGG CCTACGACATCGCCAAGCGCGGCGTCTCCGCCTTCATCGAGGAATTGCTCAAGCCGCAGAACGACGGCGAGCCGGTGAAGAAGGCGATGGTCGACCGGAT GATCGCCGAGATCGACGCCAAGCTCAGCACGCAGATGGACGAGATTCTCCATCATCCCGATTTCCAGGCGCTGGAGTCGGCCTGGCGCGGCCTGCAACTG CTGGTCGACCGCACCAACTTCCGCGAGAACATCAAGATCGAGATTCTCAGCGTTTCCAAGCAGGACCTGCTGGACGATTTCGAGGACTCGCCCGAGGTGA TGCAGTCCGGCCTGTACAAGCACATCTACACCGCCGAATACGGCCAGTTCGGTGGCCAGCCGGTCGGCGCCATCATCGCCAACTACTACATGTCGCCCAG TTCGCCCGACGTCAAGCTGATGCAATACGTCTCCAGCGTGGCCTGCATGGCCCATGCGCCATTCGTGGCGGCCGCCGGTCCGAAGTTCTTCGGCCTGGAA AGCTTCACCGGCCTGCCGGACCTGAAGGACCTGAAGGATCATTTCGAAGGCCCGCAGTTCGCCAAGTGGCAGAGCTTCCGCCAGTCCGAGGATTCCCGCT ACGTGGCGCTGACCGTACCGCGCTTCCTGCTGCGCACGCCCTACGATCCGGAAGAGAATCCGGTCAAGTCGTTCGCCTACAAGGAGACCGTGGCCAACAG CCACGAGCATTACCTGTGGGGCAACACCGCCTATGCCTTCGGCACCAAGCTGACCGACAGCTTCGCCAAGTATCGCTGGTGCCCGAACATCATCGGGCCG CAGAGCGGCGGTGCGGTAGAGGACCTGCCGTTGCACCACTTCGAGAGCATGGGCGAGATCGAGACCAAGATCCCCACCGAGGTGCTGGTGTCCGATCGCC GCGAGTACGAACTGGCCGAGGAAGGCTTCATTTCCCTGACCATGCGCAAGGGCAGCGACAACGCCGCGTTCTTCTCCGCCAGCTCGGTGCAGAAGCCGAA GTTCTTCGGCATCAGCGCCGAAGGCAAGGCCGCGGAGCTGAACTACAAGCTCGGCACCCAGTTGCCGTACATGATGATCGTCAACCGCCTGGCCCATTAC CTGAAGGTCCTGCAACGCGAACAGCTGGGGTCGTGGAAGGAGCGTACCGACCTCGAGCTGGAGCTGAACAAGTGGATCCGCCAGTACGTCGCCGACCAGG AAAACCCCAGCGCCGAAGTGCGCGGCCGTCGCCCGCTGCGCGCTGCACAGATCATCGTCAGTGACGTCGAGGGCGAGCCGGGCTGGTACCGCGTCAGCCT GAACGTGCGCCCGCACTTCAAGTACATGGGGGCGGACTTCACCCTGTCGCTGGTCGGCAAGCTGGACAAAGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGAGCTTTCCATGACTGGATACGGCAGCCTGTTCGAGCGCCTGAACGGCGACGCGGATAAGCGCGTCGGCTGGAGCCGCGAGGTTTCCGCCATGGCGT CGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGGGCGGGCAGCGTGCAGACGCTGTCCGACTACGGGTTGCCCGATCTCAACGACATGCGCCTGAG CCTGCACGACTCCCTGAGCCAGGCCCGCTCGGCCATCGAAGGTTTCATCGAGGCTTACGAACCGCGCTTGAGCGACGTGCGTGTCGTTTCCCTGCCACGC GACAACGACCAGCTCCGCCTGGCCTTCAGCATCGAAGGCTTGCTGGAGGTGGGAGGTTTCAAGCGCCAGGTGAGTTTTTCCGCATGCCTGGATGGCAGCG GCCAGGTGAAGGTCAGCTAAGGAGGTTTCGATGTCCGGCAAACCCGCAGCCCGCGTTTCCGATCCCACCGCTTGTCCGCTCCCCAGGCACGGCAGCAATC
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| Amino Acid Sequence |
>type VI secretion protein
MSTSAAQQGRNQNGEYNILDSIIAETRLSPDDEAYDIAKRGVSAFIEELLKPQNDGEPVKKAMVDRMIAEIDAKLSTQMDEILHHPDFQALESAWRGLQL LVDRTNFRENIKIEILSVSKQDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYYMSPSSPDVKLMQYVSSVACMAHAPFVAAAGPKFFGLE SFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYVALTVPRFLLRTPYDPEENPVKSFAYKETVANSHEHYLWGNTAYAFGTKLTDSFAKYRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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