Pseudomonas aeruginosa BWH057, V558_03812
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH057 adTyM-supercont1.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGCTGGCCGAGCAGATCGGCCGCCGCCCGCCGAGCATCGATACCTCTGGCCTGCTTCCGCGCGGCGCGCTGGCTGGCTGAATTCCCCTCGACCTGGAG CACTCCCATGGAACCGACCCGTATCGCCACCAACGACCGCCTGTCCGCCGCGGTCTGCTTCGACGCCCTGGTATTTCTTTCCGGCCAGGTGCCGGGCCAG GCCGAGGATATCCATGGCCAGACCCGCGAGGTGCTGGCGAAGATCGACGCGCTGCTGGCCGAGGCCGGGTCGCGCAAGGAGCGTATCCTCAGCGCGACCA TCTACCTGAAGGACATCGCCCGCGATTTCGCCGCCCTGAACGAGGTCTGGACCCAGTGGTTGCCGACCGGCCAGGCGCCCAGCCGGACCACCGTCCAGGC GGAGCTGGCGCGTCCGTCGGTGCTGGTGGAGATCACCGTGGTGGCGGCCAGGGGCTGACTTACTTTCCATAGCCATAAGAAAAAAGAGGCAGAACCTCCG
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| DNA Sequence for Gene |
>V558_03812
ATGAAAATCCTTGTATCCAGCACTCTCGCACTCTCCCTGTCGCTCGCCATCGGCGCCGCGCAGGCCGAGGAACTCAGCGGCACCCTGAAGAAGGTTGCCG ACAACGGCACGATAACCCTGGGTTATCGCGATGCCTCGGTGCCTTTCTCCTACCTTGGCGATAACAGCGGCCAGCCCATGGGCTATTCGGTGGAACTGGC CGACAAGGTGGTGGAGCGGCTCAAAAGCACCCTCGGCAAGCCGGAACTCAAGGTGAAGTACAACCTGGTCACTTCGCAGACCCGTATCCCTCTGGTGCAG AATGGCACCGTCGACCTGGAGTGCGGCTCCACCGGGGTCACCGCCGAGCGGCAGAAACAGGTGGCGTTCTCCTACGGCTTCATCTACGTCAAGGGCCAGT TGCTGACCCGCAAGGACAGCGGCATCGCCCACTTCGACGACCTCAAGGGCAAGAACGTGGTGACCACCGCCGGCACCACCAACGAGCGCTACCTGAAGAA CTACAACGCCGAACACAAGCTGGGGATGAACGTGGTCAGCGCCAAGGACCACGGCGAAGCCTTCCAGATGCTGCAATCGGGTCGCGCGGTGGCCTTCTAC ATGGACGATGCGCTGCTCTACGGCGAACGCGCCAAGGCGCGCCAGCCGCACGACTGGGTGGTGGTCGGCGAGCCGCAATCGCGGGAGATCTACAGCTGCA TGGTGCGCAAGGACGACCCGCAGTTCCTTGCCCTGGTCAACGAGACCCTGGCCGGGCTGTATCGCTCGGGCGAGATACAGGGCATCTACCAGCGCTGGTT CCAGCAGCCGATCCCGCCCAAGGGGTTGAACCTGGAGTTTCCCATGACCGCGGAGCTGAAGGCGATCCTCGAGAACCCCACCAGCGATCCGGTGCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCTAGCGCTGCAGGCCGAGATGGCGGATCGACGGCGTCGGCGCGTCCAGGCGCGACCAGACGTCGTCGGCCAGTTCGGCCGGATAGAACGACGGCAG GCCAGGCAGTTCGTCGCGGGCGATCCAGCCGACCTCGCGGATATCGAACTCGTCGCCGCCCAGGCCCTTCAGGTTGGCCAGGGTCGGCTCGCCACGCCAG GCGTCGATGCGGTAGAACAGCTCCATGTGGAAGCGCCCGGCGGCGGGTTCGGCGAATTCGCGCACGTAGACCAGCGGGCCGACGTCCACCCGCAGGCCGG TCTCCTCGAAAAACTCGCGCCGGACGGTATCCTTCGTCGATTCGTCGCATTCCGACTCGAAGCCGCCGCCGGGCGGAATCCAGTAGATGTCGCCGCCGAC CTCGTGGCGGACCAGCAGGATGCGTTGCTCCACCACCAGCAGGCCGGCGGCGCGGATACGGTGTCGCAAGGCCTCGGCCATGCTCGTTCTCCCGGCGCCA
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| Amino Acid Sequence |
>ABC transporter
MKILVSSTLALSLSLAIGAAQAEELSGTLKKVADNGTITLGYRDASVPFSYLGDNSGQPMGYSVELADKVVERLKSTLGKPELKVKYNLVTSQTRIPLVQ NGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTRKDSGIAHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVSAKDHGEAFQMLQSGRAVAFY MDDALLYGERAKARQPHDWVVVGEPQSREIYSCMVRKDDPQFLALVNETLAGLYRSGEIQGIYQRWFQQPIPPKGLNLEFPMTAELKAILENPTSDPVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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