Pseudomonas aeruginosa BWH056, V557_RS0106760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH056 adTwB-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTCCGCCTATCAAGGCCGGGTAGCTGAGGCTATCGATGCGCTACGGGCTTCCGCGCCAATCTCGGGCGACGGGGGAAACACTGGCCGTTTCCAGGCCGG TGAGCACCAGGCGACCACGGGACTGGGTGGACTCGTCGAGGGCAATGCATCGGGTCACAGCGGCAATGGCGTCATCCTCGCCGATCTGCGCGGTGGTCTA CCCTCGTTCTCAAGCCTTCCCGCGGCTGATCGTATTCAAGGCACAGCGCCCGGTCACGATGGGAATGGAACTATTCTCGCCAATTGGCAGGGTGCGCAGG CGACGGTCCAGGCCTCGCCTTCGACAGTGCGTGTAGAGGGGGTAGTTTCCAGTCCAGGTGGCAATGGCAGCATCCTTGCCGATCTGCCGGCTGAGCAGTC GTCGGTGCAGGCACTGCCTTCGGCCGTTAGGGCTCAGGGCAGCCTGCCTCGCCTCGAAGAGCGGAGCGCCGTTCTTGCCGAGCCTCCGGTTGGGCAGCCA
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| DNA Sequence for Gene |
>V557_RS0106760
GCGTTGCAAACCCTGCCGTCGGTTGCGCGCGTTGAGGGCGTGCCCAGCAATGCCACACCGAGCAACAGCCACAAGTATCTGATCGAGACCAACCCGGCGC TCACCGAGCTGAAGCAGTTCCTCAACTCGGACTACCTGCTCGGTGGCCTGGGTATCAATCCGGATGACAGCAAGAAGCGCCTGGGCGACGGTCTATACGA GCAGCGCCTGGTACGCGAAGCGATCGTCCAGCGTACGGGGCAGCGCTTCATCGCCGGATTGAACAGCGACGAAGCGATGTTCCGCTATCTGATGGACAAC GCCATCGCCAGCAAGGACGTATTGGGACTGACCCCTGGCGTCACCCTCAGCGCCGCCCAGGTGGCCGCGCTGACCCACGACATCGTTTGGCTGGAAGAAG TCGAGGTGAATGGCGAGAAGGTCCTCGCCCCCGTGGTCTACCTGGCCCAGGCCGAGGGGCGGTTGGGCCCGAACGGCGCGCTGATCCAGGGGCGCGACGT GAACCTGATCACCGGCGGGGACCTGAGGAACGCCGGTACCCTGCGCGCGCAGAACGACCTCAGCGCGACAGCCGGCAACATCGACAACAGCGGCCTGATC GAGGCCGGCAACCGCCTCGACCTGCTGGCCAGCGGCTCCATCCGCAATGACCAGGGCGGCATCATTGCCGGGCGCGAGGTAAGCCTCTCCGCCCTTACCG GAGACGTCATCAATGAACGGACGGTGACCCAGCACCAGTCCTCCTACAGGGGAACCGGTACCACTGAGGCATTTGCCGATAGCGCCGCGCGTATCGAGGC TGCGCAGAAGCTGACCGTTTCGGCAGGTCGCGATGTAGCCAATATTGGCGGTGTCATCGACAGCAAGGGCGACCTCGCCTTGCAAGGCGGCAGGGATGTC CTGGTTTCGGCTGCGGTAGCGGAGCGGGGCTGGACGGCAGGAAGCCAGGCATACCAGACCCAGACGACCCAGATGGGCGCCGAAGTCGTGGCGGGGCGCG ATATCAGCGTCAGCGCCGGACGCGATATCAGCGTCGTGGGCAGCCGCATCGACGCTCGTCGCGACGTGACATTCGAGGCGGGTCGCGATGTGGGCCTGGT CGCGGCTGCCAACGAAGAGCATGCCTATGGCAAGACCAAGAAGGTCACTTTCCAGGACGACAAGATCACCCAGCAGGCCACTCGCGTGGACGCTGGCGGC GACCTGGCGATCAATGCCGGACAGGACCTGCGGCTGGTCGCGAGCCAGGCCAGCGCCGGCGACGAAGCCTACCTGGTGGCCGGCGACAAGCTGGAGCTGC TGGCCGCCAACGACAGCAGTTACTACCTCTACGACAAGAAGAGCAAAGGCAGCTTCGGTAGCAAGAAGACCCGGCGCGACGAAATCACCGATGTGACGGC AGTGGGCAGCCAAATATCCAGCGGCGGCGACCTCACCCTGCTCAGTGGCGGCGACCAGACTTACCAGGGCGCGAAGCTGGAATCGGGCAACGACCTGGCC ATCGTCAGCGGCGGCGCGGTGACCTTCGACGCGGTGAAGGACCTGCACCAGGAGAGCCACGAGAAGAGCAAGGGCGACCTGGCGTGGCAGTCGTCGAAGG GCAAGGGCCAGACCGACGAAACCGTACGCCAGAGCCAGCTCGTCGCCCAGGGCAACCTGGCGATCAAGGCCGTGGAAGGCCTGAAGATCGACCTCAAGCA CATCGACCAGAAGACCGTGAGCCAGACCATCGATGTCATGGTCAAGGCCGATCCGAGCCTCGCCTGGTTGCGGGAGGCCGAAAAACAGGGCGACGTCGAC TGGCGCAAAGTCCGGGAAGTACATGACAGCTTCAAGTACAGCCATTCGGGGTTGGGAGTCGGAGCGCAACTGGCCGTTGCCATCGTCGTGACTTATCTCA CTGCCGGTGCTGCTAGTGCGGCGATTGGTAGTGCTGCTGGTGCCACCGCTGGATCAGGGACCGCGATGGCTGCTGGTACGGCCGCCACAGCTACGACTGC GGCCACCTCAGCAGGCTGGGCGAACATTGCCCTCACTGCCGCGGCGACATCCGCCGCCTCCCAAACCGCCATCAGCACCATCAACAACCGAGGTGATTTG GGAGCGGTTGCCAAAGACGTGACCTCCAGTGATGCCCTGAAAAACTACGCTGCCGCAGGGGTCAGTGCGGGCTACTCTCCGCAAAACATTGGTTTGCAGC TGTCCGTCAATGCCGCACTGAAGACCGTCACCCGGGGTGGCAGTTTCAAGGACAACCTCGGACAAGCCGCTATCGACATGATTGCGGATGCTGTTTCCGG GGCTATCTACAACGAGGTGGGTGATGCCCTGACGGGTACCGGTATACCGACTAAGGTGGCGGTCCACGCCTTGGTCGGTGGTCTGATGGCCGAAGCGGCA GGTGGAGACTTCCGTACTGGAGCCTTGGCGGCGGGTGCCAACGAAGCGGTGGTAGCGGCTTTCGGGGAGAAAATTTTCCCTGGTGAGCAGCACGAAAAAC TGTTGGGCATGACCTCGAACCTGATTGGCATGACGGTCGCGGCAGCTGCTGGCGGAGACGAAAAGGCACAGGAGAAGGCTGGCTGGGTGGCGCAGCAGGC GACCCTTAACAACTATCTCTTCCATGAAGAAATGGAGGAGATGGCCAATAAGATCAAGGCGTGCGGAGGTGATCAGAACTGCGAGCAGCCGATCCGTGAA CACTATGCCGACTTGGATGAACAACGAAAC
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGCATTCCCAGAGCTCTGCCGGGCCAACCTAACGTCTTGTGTCCAGATCGCCAACCGCTTGAGCGCGGAAGAACAGCTCAATGTCGATCTGATGGAAA GTTTGCGGAACGCTCAGTACAACGGTATAGCCGGTGCTATCGGCATTACGTTCATCCCCAGTAACCGTGTATCTGCCGATCAAGCTACCCTAGAGTATGT CCGTCAGACCGGAGGCACAGCAGAGGAATTCAAAGCGGTCCTGGCTATGCTGGGTGCTGGGGTGGCTGGAGTCGGTCCCAAAACGGTTGAAAAAGCTACC AATGCATTGGATCGTTTGAAGGCACTTCAAGCGGCGAAGGGAACAGTACCGGCAGAAGTACCGGCTACTTCTGTAATAGCTAAAGAAGGTTTATACAATG AATTACGTGCTGCTCAGGCGAGGGATGCTTTAATCGGAACTACTTTGCCAGGTGCGAAGGCTCCAGTTACGGTTACAGCGGAGGGAAGCGTTGGAGGAAA
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| Amino Acid Sequence |
>hemagglutinin
ALQTLPSVARVEGVPSNATPSNSHKYLIETNPALTELKQFLNSDYLLGGLGINPDDSKKRLGDGLYEQRLVREAIVQRTGQRFIAGLNSDEAMFRYLMDN AIASKDVLGLTPGVTLSAAQVAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLGPNGALIQGRDVNLITGGDLRNAGTLRAQNDLSATAGNIDNSGLI EAGNRLDLLASGSIRNDQGGIIAGREVSLSALTGDVINERTVTQHQSSYRGTGTTEAFADSAARIEAAQKLTVSAGRDVANIGGVIDSKGDLALQGGRDV LVSAAVAERGWTAGSQAYQTQTTQMGAEVVAGRDISVSAGRDISVVGSRIDARRDVTFEAGRDVGLVAAANEEHAYGKTKKVTFQDDKITQQATRVDAGG DLAINAGQDLRLVASQASAGDEAYLVAGDKLELLAANDSSYYLYDKKSKGSFGSKKTRRDEITDVTAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLA IVSGGAVTFDAVKDLHQESHEKSKGDLAWQSSKGKGQTDETVRQSQLVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDVMVKADPSLAWLREAEKQGDVD WRKVREVHDSFKYSHSGLGVGAQLAVAIVVTYLTAGAASAAIGSAAGATAGSGTAMAAGTAATATTAATSAGWANIALTAAATSAASQTAISTINNRGDL GAVAKDVTSSDALKNYAAAGVSAGYSPQNIGLQLSVNAALKTVTRGGSFKDNLGQAAIDMIADAVSGAIYNEVGDALTGTGIPTKVAVHALVGGLMAEAA GGDFRTGALAAGANEAVVAAFGEKIFPGEQHEKLLGMTSNLIGMTVAAAAGGDEKAQEKAGWVAQQATLNNYLFHEEMEEMANKIKACGGDQNCEQPIRE HYADLDEQRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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