Pseudomonas aeruginosa BWH055, V556_01053
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH055 adTzt-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGTTCTCCAACTACGCGTCCCTGCACGAGAAAGGCAGCATCGTCCGCGGTACCGTGAAGGAAGTTGACGCCAAGGGCGCTGTCATCAGCCTGGGCGAC GACATCGAAGGTATCCTGAAGGCTTCCGAAATCAGCCGTGACCGCGTCGAAGACGCGCGCAACGTCCTGAAGGAAGGCGAGGAAGTCGAAGCCAAGATCA TCAGCATCGACCGCAAGAGCCGCGTCATCAGCCTCTCCGTCAAGTCCAAGGACGTCGACGACGAGAAGGACGCAATGAAAGAACTGCGTAAGCAGGAAGT AGAAAGCGCTGGTCCGACCACCATTGGTGATCTGATCCGTGCTCAGATGGAGAATCAGGGCTAAGTCTCTGATCCATCATGAAAAAGGGCGGCCTAGGCC GCCCTTTTTCGTTTTCCCCTTCTTGGACCTGTTCAAAGACTGATCAGCATGCTAAAAGAGACCTGAGCTGATCTAGCCGCTTGAAAAAGAAGGGAAAACC
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| DNA Sequence for Gene |
>V556_01053
ATGACCAAGTCGGAGTTGATCGAACGGATCGTTACCCATCAGGGGCAACTGTCCGCGAAGGATGTCGAGTTGGCAATCAAGACCATGCTGGAGCAAATGT CCCAGGCCCTGGCGACCGGGGACCGGATCGAGATCCGTGGTTTCGGCAGCTTTTCCTTGCACTACCGCGCCCCGCGCGTCGGTCGCAACCCCAAGACCGG GGAGTCGGTACGCCTCGACGGCAAGTTCGTGCCGCACTTCAAGCCGGGCAAGGAGTTGCGGGATCGGGTCAACGAGGTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTGGCTGAAACATGTTATTAGGAGTCTTTATGCTTCTCAGGCGTCTGGCTATCGCTGGCTTTTTTTTCCTATTGGCGCTTATAGTCATTGTCTTCGTAT TGGAGAATCTTGACAGTAGTCATGTGACGTTTTTGGGGAGGCAGTCTCCTGAATTTCCTTTGGTGCTCTTGCTGCTATCGTCTTTTGTTATGGGGGGGCT GCTTGTTCTACTAATGAGTCTTCCTGGCTACATGCGCACACGCAGCATGCTTTCTGGCTTGCGTACGGAAGTGGCGAAGCTAAGGACAAGTCCGCTGGAT CACTAAGGGCGGCGGAAAGGCTTTGCCGGGAGGGTGATTGCTCGAGGGGTGTAAGGGGCGGAGGAAACTAACCTTCTGTGTGGTTGTCTATGCATGTTGA GCTATTTATCTCGACACTGTCGGATGAAAGGGCTTGTCGAAGGAGGCTTTCGGTTCGTACTCCTTGTATTCTCGAGTCATGCTGGCAAAATGCAGTAGCT
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGESVRLDGKFVPHFKPGKELRDRVNEV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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