Pseudomonas aeruginosa BWH054, V555_01985
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH054 adTyv-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTCGACCAGACAAGACCATCCGGTCACTCTTAGACCTTCGTGTAGTAGTCTTGAAAAAACACTACAAAACGTTTGACGACGGATTTTTTCCAGAGCATG ATGGCCCCGCTCCCGCTAATCAGGGGCTCTGAAACGACGAGCTCCCGGTGCCTGCGCCGATACGCCCTCGGCCTCCACCGTGTTGATCTGCCCACAAGGC GGCTTGACGAGATTGCGACTGGAACGAAGTTGTCCTGAGGGACGGGGAAGCGTTTACGTATCAGCCAGATCGAAAGACTCGACAGCGAGTCGCCCACCGG CAACCACGAGCCGAACGGCACTTGAGCCAGTCGAGAAGCACGGTCCGCGAACTGTTCGTCTCCACCCCTCCTCGGCGTCATTCTTCGCCACGGTCATTCT CTCGCCATGCAGCGGTGAGCCACCCGCAAGACAACCTTCACCAGCAGGTTTTGAGTGGGTCAGTCGGTGCTCAACCAATACATTTCTTGAAGGATTGACC
|
|
| DNA Sequence for Gene |
>V555_01985
ATGTCCGCATATCAGAACGAGATCAAGGCAGTTGCCGCGCTGAAAGAGAAGAACGGCAGCAGCTGGAGCGCGATCAACCCCGAGTACGCAGCTCGCATGC GTATCCAGAACCGCTTCAAGACCGGCCTGGATATCGCCAAGTACACCGCGGCCATCATGCGCAAGGACATGGCCGAATACGATGCGGACTCCTCCGTCTA CACCCAGTCGCTGGGTTGCTGGCACGGCTTCATCGGGCAGCAGAAGCTGATCTCGATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGTTGGATGGTCGCCGCGCTGCGCTCCGACTTCGGCCCGCTGCCGGACCAGTCCATGCACGAGAAAACCGCGGTTTCCGGCCTGATCGAAGAGCTGT ACACCTTCCTGCGCCAGGCTGACGCCCGCGAGCTGGACCTGCTGTTCACCGGCCTGGACGCTGCCCGCGCCGCTGGCGACAAGGCCAAGGAAGCCGAGCT GCTGGCCCAGATCGACAACTTCGAAACCCACGTGGTGCCGATCATCGCCGACATCGACGCCGGTTTCGGCAACGCCGAGGCGACCTACCTGCTGGCCAAG AAGATGATCGAAGCCGGCGCCTGCTGCATCCAGATCGAGAACCAGGTGTCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAGGTCACCGTTCCGCACA TCGACTTCCTCGCCAAGATCAATGCCGTACGCTACGCCTTCCTCGAGCTGGGCGTGGACGATGGCGTGATCGTCGCCCGCACCGACTCCCTGGGCGCCGG CCTGACCAAGCAGATCGCCGTGACCAACGAGCCGGGCGACCTGGGCGACCTGTACAACTCGTTCCTGGATTGCGAAGAGATCTCCGAGGCCGAGCTGGGC AACGGCGACGTCGTGATCAAGCGCGAAGGCAAGCTGCTGCGTCCGAAGCGCCTGGCTTCCAACCTGTTCCAGTTCCGCAAGGGCACCGGCGAAGATCGCT GCGTCCTGGACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTCTGGATCGAAACCGAGAAGCCGCACGTCGGCCAGATCAAGGCGATGGTCGATCG CATCCGCGAAGTGATTCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCCTTCAACTGGACCCTGAACTTCCGCCAGCAGGTGTTCGATGCGTTCGTC GCCGAAGGCAAGGACGTTTCCGCCTACGACCGCAACAAGCTGATGAGCGTCGAGTACGACGACACCGAGCTGGCCAAGGTCGCCGACGAGAAGATCCGCA CCTTCCAGCGCGATGGCTCGGCCCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACCGCCGCGCTGTCCACCGACAACCTGGCCAA GGGCTACTTCGCCGACGAAGGCATGCTGGCCTACGTGAAGGGCGTGCAGCGCCAGGAACTGCGCCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCT GGCTCCGACATCGGCGACAACCATAAAGAGTACTTCGCTGGCGAAGCCGCTCTGAAGGCCAGCGGCAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAACAGGGGCCAGCCGGGCAGCCACGATCTGCCCGGCCCGCCTCGCGAAAACCCCGGCTCCGGCCGGGGTTTTTCATTTCCGGATCATGGCAAAAGGCC TCGAGTGCCTGTCATCGTCCCGTCGCTTTCAGCGGTTAGCGTCAATGCTCCGTCGATCAGCCCACAAGGAGCACGTCCGTGAGCCTGGAGAAAAAAGATG CCATCCTGTTCGGTGATGGCGACGAGTTGCCCAGCAACCATTCGAACAACCCGCACATGAACGACCTGATCGCCGGCCTCGGCCGCCGCCAGGTCCTGGC CGGCGGCGCGGCGCTCGGCGCCCTCGCCTTCCTCGGCGTCGCGCTCCCCGCCAGCGCCGCCCCCGCCGAAGCGCAGGCGCCCGCCGCGGAAGGCCTGCGC GGCTTGCCTTTCAAACGCCGCAACCGCTTACCCTTCGAAGCCATCGCCAGCGGCCGCGCCGATACCATCCGGGTGCCCGCCGGCTACAAGGCGACGCCCT
|
|
| Amino Acid Sequence |
>isocitrate lyase
MSAYQNEIKAVAALKEKNGSSWSAINPEYAARMRIQNRFKTGLDIAKYTAAIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSDFGPLPDQSMHEKTAVSGLIEELYTFLRQADARELDLLFTGLDAARAAGDKAKEAELLAQIDNFETHVVPIIADIDAGFGNAEATYLLAK KMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHIDFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTKQIAVTNEPGDLGDLYNSFLDCEEISEAELG NGDVVIKREGKLLRPKRLASNLFQFRKGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKAMVDRIREVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRNKLMSVEYDDTELAKVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADEGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|