Pseudomonas aeruginosa BWH053, V554_02906
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH053 adTyt-supercont1.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCTGTCGGCGGCCTGGCAGGACATCCAGGCGCGCTTCGCCGCGACGCCGCTGGAGCGGGTCGTGGCCTTCCTGCAGAAAGCCCTGAGCGCCGACCTGG ACAGTCAGTCGAGCCGGCTCGATCCGGTGAAGCTGGAGCGGGTCATGAGCGACATGCACAAGCTGCGCGTGCTCGGCGGCCTGGCGGAGCAGGTGGGGGC GCTCTGGCAGGTGCTGGTGACAGGGGAGCGGGGCCATGGCATACGGGCCTTCTGAATTGACCGGCGCAGTCATCGCCTTGCTCGAGAAGCGCTGGGTCGG CGTCGCCGAGGTGCAGGCGTTGCTCGAGCCGTTGCCGCTGGCCGACGTCGCCCGGCAGATCCATTTCTTCCGCGAACTGAAGCGTCTCTACCGCCTGTTG CCGGTCGAAGTGTTCGGCGACGACGAGCAGCGCCAGAATCTTTTGAATGCCTGCCAGATGGCACTCGACCTGGCGATCGAGCGCGAAGAGGAGCAGCAGC
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| DNA Sequence for Gene |
>V554_02906
ATGGACTGGGTTGAGCTGGCCGTCGCGCAGTTCTGCCAGGACCTGCGGGTGAGCGTACCGGCGCCGCTGGCGCGCGTGGTGCAACTGGATTTCGAGGACA GCGGCACCTTGCAGCTGGAACGCCATGGCGAACAGTTGTCGCTCTGGCTGGCCTGTGACCTGGCCTGGCACCAGGCCTATCGCGGAACGCTGCGGGCGTT GCGCCTGTGCCATGCGCGCGCGGCCGGGAGCCTGCCGCTGCGTTGCGCCTGGAGCGGCGAATCGCGCCTGCTGCTGTGCATCACCCTGGAAGCCCGGCAG GTCGGCATCCCGACGCTGCACCAGGCCTTGCAGGCGCTGCGCTCGGCGCGCAGCGAAGTGCTCGCCGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGGTCGGTGCCTGGCACATCGGCATCGAACGGCTCGACCTGGCGCATGCCGAGCCGTTCGCGCCGCCCCTGCCGGAGCGCCATCTGCTGGCGCCCGA CGGCCGGCCGGTGGAGACCCACGTCGCCAGCCTGTATCCCGCGCAGCAGGCGCAACAGCGCCTGTTCGACTACGCCCGGCCCCAGCTGGAGTTCCACGGC CTGCTGCGCCCCGGCGACTTCCGCCAGGCGCTGCGCGATCTCCGCCTGGCCCTCACGCTGCCCCGCCAGCCACCCCTGCAGGCTGCGGCCTGCCTGCTCG GCGAGCGCGACGAAGACGAGCGACTGCTGCAAATGGCCCTGAACCTGTTGCACAAGGTATGAATCGATGACGTTGAAACCGACGCAACAGCGCCTGTTGC TGATGCTGGGCTGGCTGCACCTGCAATGCGGCCAGCCGCGACGCGCCCAGGTGTTGCTGGAGGCCTTGCTGAGCATTGCGCCGGAGCGCCGCGACGGGCG
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| Amino Acid Sequence |
>type III secretion protein
MDWVELAVAQFCQDLRVSVPAPLARVVQLDFEDSGTLQLERHGEQLSLWLACDLAWHQAYRGTLRALRLCHARAAGSLPLRCAWSGESRLLLCITLEARQ VGIPTLHQALQALRSARSEVLAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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