Pseudomonas aeruginosa BWH053, V554_02019
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH053 adTyt-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAGGCTTCGTTGCAGAACGCGACCCAATATCTGCAACGCCTGGAAATCGCCCACAAGGTCAGCGTCATGGACGGCAACTTCAGCACCACCGATCTCTC CACCGGGCAGCGCAAGCGCCTTGCGCTGATCAATGCCTGGCTCGAAGAGCGGCCGGTCCTGGTCTTCGACGAATGGGCCGCAGACCAGGACCCGGCTTTC CGCAGGGTCTTCTACACCGAACTGTTGCCGGACCTGAAGCGCCAGGGCAAGACCATCATCGTGATCAGCCACGATGATCGCTATTTCGAAATGGCGGACC AGTTGATAAGGCTCTCGGCAGGCAAGGTCGTCAAGGAAACCGAGACGGCGTGAAACTTTTTCATCCGGTTTTCCGTGGGTAAAACGTCATACTAAGAGAA TTGAGAAGCGATCTCATTTATTCGCAACTTGCCAACCTAAGAAGAGCAATCACCCATGCCAGCACCACACGGTCTCAGTCCTCTGAGTAAGGCGTTTTTG
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| DNA Sequence for Gene |
>V554_02019
ATGCGCCGTGCCTTCCAACGCAGGATGCTTCCCCACTCGCTCGCCATGGCCCTGAGCCTGCCGCTGGCGGGATATGTCCAGGCGCAGGAAATCGAGTTCG ACATCCCTCCCCAGGCGCTGGGCAGCGCACTCCAGGAGTTCGGCCGCCAGGCGGATATCCAGGTGCTGTATCGCCCGGAAGAGGTCCGGAACAAGCGTAG CAGTGCGATCAAGGGCAAGCTTGAGCCGAACCAGGCGATTACCGAGCTGCTTCGTGGCACCGGCGCATCGGTGGACTTCCAGGGCAATGCGATAACCATC AGCGTCGCCGAGGCGGCGGACAGCAGCGTCGATCTCGGCGCCACCATGATCACCTCCAACCAGTTGGGCACCATCACCGAGGACAGCGGCTCCTATACGC CAGGCACTATCGCCACGGCGACCCGCCTGGTCCTGACTCCGCGCGAGACGCCCCAGTCGATCACCGTGGTCACCCGCCAGAACATGGACGACTTCGGCCT CAACAACATCGACGACGTCATGCGCCATACGCCGGGCATCACCGTCTCGGCCTACGACACTGACCGCAACAACTACTATGCCCGCGGCTTCTCGATCAAC AACTTCCAGTACGACGGGATTCCCTCGACGGCCCGCAACGTCGGCTACTCCGCGGGCAATACGCTCAGTGACATGGCCATCTACGACCGGGTGGAAGTAC TCAAGGGGGCGACCGGCCTGCTCACCGGTGCGGGGTCCCTCGGCGCCACGATCAACCTGATCCGCAAGAAACCTACCCATGAATTCAAGGGCCATGTCGA ACTGGGCGCGGGCAGTTGGGACAATTACCGCTCCGAACTGGACGTCAGCGGCCCGCTGACCGAGTCCGGCAACGTCCGCGGCCGGGCGGTAGCCGCCTAC CAGGACAAGCACTCGTTCATGGATCACTACGAGCGCAAAACCAGCGTCTACTACGGCATCCTCGAGTTTGATCTGAATCCCGACACCATGCTTACCGTCG GCGCCGACTATCAGGACAACGATCCCAAGGGATCGGGCTGGTCGGGCAGCTTCCCGCTCTTCGACAGCCAGGGCAACCGCAACGACGTCTCCCGCTCCTT CAACAACGGAGCCAAGTGGAGCAGTTGGGAACAGTACACCCGCACCGTCTTCGCCAACCTCGAGCACAATTTCGCCAACGGCTGGGTCGGCAAGGTGCAG CTCGATCACAAGATCAACGGCTACCACGCGCCCCTCGGCGCGATCATGGGCGACTGGCCGGCACCGGACAACAGCGCCAAGATCGTTGCGCAGAAGTACA CCGGCGAAACCAAGAGCAACTCGCTGGATATCTATCTCACCGGCCCCTTCCAGTTCCTCGGTCGCGAGCACGAGCTGGTGGTCGGCACCTCGGCTTCCTT CTCCCACTGGGAGGGCAAGAGCTACTGGAACCTGCGCAACTACGACAACACCACCGACGACTTCATCAATTGGGACGGCGATATAGGCAAGCCCGACTGG GGTACCCCATCCCAGTACATCGATGACAAGACCCGCCAGTTGGGCAGCTACATGACCGCCCGCTTCAATGTGACCGATGACCTGAACCTGTTCCTAGGTG GACGCGTGGTCGACTACCGGGTAACCGGCCTGAATCCGACCATTCGCGAGTCCGGACGCTTCATTCCCTACGTCGGCGCGGTCTACGACCTGAACGATAC CTACTCCGTCTACGCCAGCTATACCGACATCTTCATGCCGCAGGACAGTTGGTATCGCGACAGCAGCAACAAACTGCTCGAACCCGACGAAGGCCAGAAC TACGAGATCGGCATCAAGGGCGAATATCTCGACGGACGACTCAATACCAGTCTCGCCTACTTCGAGATTCATGAGGAAAACCGCGCGGAGGAAGACGCCC TCTACAACAGCAAACCGACCAACCCCGCCATCACCTACGCCTACAAGGGCATCAAGGCCAAGACCAAGGGCTACGAGGCGGAAATCTCGGGTGAACTGGC GCCAGGCTGGCAGGTTCAGGCTGGCTATACCCACAAGATCATTCGCGACGACAGTGGCAAGAAGGTTTCCACCTGGGAGCCTCAGGACCAGTTGAGCCTC TACACCAGCTACAAGTTCAAGGGCGCCCTGGACAAGCTCACGGTCGGCGGCGGCGCCCGCTGGCAGGGCAAGAGCTGGCAGATGGTCTACAACAATCCCC GCAGCCGCTGGGAAAAGTTCTCCCAGGAAGACTACTGGCTGGTGGACCTGATGGCCCGCTACCAGATCACCGACAAGCTGTCGGCCAGTGTCAACGTCAA CAACGTCTTCGACAAGACCTACTACACCAACATCGGTTTCTACACCTCGGCATCCTATGGCGATCCACGGAACCTGATGTTCAGCACTCGCTGGGACTTC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGACTGCGAAAAAGAACGCCCCGCAATGCGGGGCGTTCTGCTTCTCGGCTACCCCACGCGACCCATCGCCGAAGACGCCTGTCGGCACGACACCAAA TGATTCCTGTACAGAAACAAAGAGCCCGCCTGAAGGCGGGCTTTGAACGGAACGGACCTGAGATCAGCGCCCGGCACGCTCCAGGGCGGCCCGGAAGCTC TGCACAAACTCAGGGTGGTCGATGATCTTGTCGTGCCGGGTATCCAGCACCCGCACCGGTTCGACACGCTCAGCCCCGATCGCCTCGGCCATCGAGCGCT CCACCGCGCTCCGCTGGATGGCATTGGTGCTGCGCGCGGCCCACCAGAGGCTGACCTTCGCCGTCAGACGCGGGTAATCCATCGCTTTCAGGCGCTCGTC GAGGATCTGTTTCAACTCCCAGGACACTTCCAGTTCGTTGCTCTGTGCGATTTCGCTGCGCAGTGTCGCGAACTCGGCGCCGATCTCCGCTTCCGCCCAG
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| Amino Acid Sequence |
>ligand-gated channel
MRRAFQRRMLPHSLAMALSLPLAGYVQAQEIEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITI SVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSIN NFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAY QDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQ LDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDW GTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQN YEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSL YTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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