Pseudomonas aeruginosa BWH052, V553_04219
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH052 adTvf-supercont1.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCTCGCGCCCGGGATGGAAGATCTGCGACAGCACCACGCAGCCTTCGGCGTGGCAGGCCTCGGCGACCCGCCGGTAGCCGGGGATGCAGGCATCGTCG GTGGCCATCAGCACGTGCGAGGTGTAGCGCGCGCTGTCGTGGACCCCCGCCACCTGCATGACGATCAGTCCGGCGCCGCCGCGGGCCCGGGCGCGGTGAT AGGCGACGAGTGGCTCGTTGACCAGGTTGTCGGTGGGCATCGACGTGTCGTGGCCGCTCGACATGATGCGGTTTTTCAGGCGTTTGCCCCGGATTTCCAG GGGGCTGAACAGGTGCGGGAAATTCACGGTTGGCGTCCTTCTTGTTGTTCTCGCGGCGCGCTTCAGAAACAGGATATGAATTTACCATCAGTAAAAAATC AACTTGTTTTTTTAAAATCGACTGGATAGTTTCTGTCCCGTGGCCGCTTCCCGGCGGCTCGCTGCGATCCACTCCACAACAAGAACAAGAGGAGACGCAC
|
|
| DNA Sequence for Gene |
>V553_04219
ATGAACCGTTCCTTTCCGTTGCGCCGCGCAGCCAGCGCCCGTCCGCACCCGGTTTTTCCTTGCCGCGTCCTGCTCGGCGCCGTCCTGCTGGCGTTCGGCG GCCTCGCGCCGGTCCAGGCCGGTGATGGCCTGGTGGTGGTCGGCTACGGCGGCGCCGGACAGAAGGCCCAGGAGGTGGCGTTCTTCCAGCCCTTCACGCA GCAGACCGGGATTCCCGTGGTGCAGAGCGAGTACAACGGCGAGATGGCCCGGATCAAGGTGATGGCCGACACCGGTCACGCCGACTGGGACCTGGTCCAG GTCGAGGGGCCGGACCTGGCGCGCGGTTGCGACGACGGCCTGTTCGAGCGTCTGGACTGGCAGGCCATCGGCGGCAAGCAGCAGTTGATCGCCAATGCCG CCCAGGAATGCGGTTCCGCCGCGCTGGTCTGGGGCGTGGCGATCGGCTACGACGCCGACCGGCTGCAACAGCCGCCGGCGTCCTGGGCCGACTTCTGGGA CGTCCAGCGCTTCCCCGGCAAGCGCGGCCTGCGCAAGCGGGCGATCTACAACCTGGAGTTCGCCCTGCTCGCCGACGGCGTGCCACGCGAGCAGGTCTAT CCGCTGCTGGCGACCCGCGCCGGTGCCGACCGTGCCTTCGCCAAGCTGGGCCAGCTCAAGCCCTACATCCAGTGGTGGGAGGCGGGAGCGCAGCCGGCGC AGTGGCTGGCCGCCGGCGACGTGGTGATGACGTCCACCTACACCGGGCGCATCGCCGACGCCCACCGCGCGGGGCGCAATCTGGCCCTGGTATGGCCGGG CAGCCTGTACGGCATGGACTACTGGGCGGTGGTCAAGGGTTCGAAGCGCGGCGCCGAGGCGCGTCGCTTCATCGCCTTCGCCAATGCCCCGGATGCCCAG GTGCGCTACGTCGAGAACATTCCCTACGGGCCGACCAACCGCCAGGCCGCCCAGCGCCTGCCCGCGCAACTGGCGAGCTGGGTGCCGACCGCGCCGGCGA ACCTGGAGCAGGGCCTGGCGATGGACGACGAATTCTGGGTCGAGCACGGCGAGGAGCTGGAGGAGCGCTTCAACGCCTGGGCCAGCCAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GACGGGCGCCACGTAACCTGCGATCATCGGGGCTGCCCGCCGGTGGTCGCGGGCGACGAGCAGGAGCCGCGAAAGGATGAACCAGGAAGTGCGCTTTTCC CGTCTGGAGCCAGAGCAGCGCAAGGCGCTGCTGATCGAGGCGACCCTGGCCTGCCTGAAGCGGCATGGCTTCCAGGGCGCCTCGGTGCGCAAGATCTGCG CCGAGGCCGGGGTATCGGTGGGCCTGATCAATCACCACTACGATGGCAAGGACGCGCTGGTGGCCGAGGCCTACCTGGCGGTCACCGGACGCGTCATGCG CCTGCTCCGCGGTGCCATCGACACCGCGCCGGGCGGCGCCCGCCCGCGGCTCTCGGCGTTCTTCGAGGCATCCTTCTCCGCCGAGCTGCTCGATCCGCAA TTGCTCGACGCCTGGCTGGCGTTCTGGGGTGCGGTGGGCAGCATCGAAGCGATCGGGCGGGTCCACGACCATTCCTATGGCGAGTACCGGGCGCTGCTGG
|
|
| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MNRSFPLRRAASARPHPVFPCRVLLGAVLLAFGGLAPVQAGDGLVVVGYGGAGQKAQEVAFFQPFTQQTGIPVVQSEYNGEMARIKVMADTGHADWDLVQ VEGPDLARGCDDGLFERLDWQAIGGKQQLIANAAQECGSAALVWGVAIGYDADRLQQPPASWADFWDVQRFPGKRGLRKRAIYNLEFALLADGVPREQVY PLLATRAGADRAFAKLGQLKPYIQWWEAGAQPAQWLAAGDVVMTSTYTGRIADAHRAGRNLALVWPGSLYGMDYWAVVKGSKRGAEARRFIAFANAPDAQ VRYVENIPYGPTNRQAAQRLPAQLASWVPTAPANLEQGLAMDDEFWVEHGEELEERFNAWASQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|